RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 ANKRD53Q8N9V6 530 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 FOXRED1Q96CU9 486 aaPredicted RBP5□□□□□ -1.61
VPS4B-203ENST00000588323 ZG16BQ96DA0 208 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 SCLYQ96I15 445 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 RPL10LQ96L21 214 aaKnown RBP5□□□□□ -1.61
VPS4B-203ENST00000588323 DEPDC7Q96QD5 511 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 HIRIP3Q9BW71 556 aaPredicted RBP5□□□□□ -1.61
VPS4B-203ENST00000588323 BOCQ9BWV1 1114 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 IGSF5Q9NSI5 407 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 DENND2AQ9ULE3 1009 aa5□□□□□ -1.61
VPS4B-203ENST00000588323 KRT37O76014 449 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 GTF2F1P35269 517 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS4B-203ENST00000588323 MAN2A2P49641 1150 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 SLC6A3Q01959 620 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 ROM1Q03395 351 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 KRTAP1-1Q07627 177 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 TCIRG1Q13488 830 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 RASA3Q14644 834 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 CC2D1AQ6P1N0 951 aaPredicted RBP4.99□□□□□ -1.61
VPS4B-203ENST00000588323 FAM111BQ6SJ93 734 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 Q6ZRM9 215 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 GAREM2Q75VX8 874 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 LRP10Q7Z4F1 713 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 OR5AN1Q8NGI8 311 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 GPHA2Q96T91 129 aa4.99□□□□□ -1.61
VPS4B-203ENST00000588323 CCDC163A0A0D9SF12 145 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 FAM221BA6H8Z2 402 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 C2orf78A6NCI8 922 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 RPS6KA4O75676 772 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 ZBTB48P10074 688 aaPredicted RBP4.98□□□□□ -1.61
VPS4B-203ENST00000588323 KCNA6P17658 529 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 FNTBP49356 437 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 RGS3P49796 1198 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 SERINC3Q13530 473 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 ELAVL1Q15717 326 aaKnown RBP4.98□□□□□ -1.61
VPS4B-203ENST00000588323 DGKDQ16760 1214 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 ARHGAP44Q17R89 818 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 KRTAP15-1Q3LI76 137 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 ABHD17CQ6PCB6 329 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 OTOP1Q7RTM1 612 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 ULK2Q8IYT8 1036 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 ZSWIM2Q8NEG5 633 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 CRAMP1Q96RY5 1269 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 AGAP2Q99490 1192 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 DNAJC7Q99615 494 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 TTPALQ9BTX7 342 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 MRPL4Q9BYD3 311 aaKnown RBP4.98□□□□□ -1.61
VPS4B-203ENST00000588323 SNTG2Q9NY99 539 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 DMRT1Q9Y5R6 373 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 PCSK5Q92824 1860 aa4.98□□□□□ -1.61
VPS4B-203ENST00000588323 UBE2QL1A1L167 161 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 TMEM191CA6NGB0 347 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 KCNQ2O43526 872 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 PRLP01236 227 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 KIF11P52732 1056 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 GAGE13Q4V321 117 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 SLFN12LQ6IEE8 588 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 FGD2Q7Z6J4 655 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 TCF25Q9BQ70 676 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 GPR87Q9BY21 358 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 NRDE2Q9H7Z3 1164 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 RCAN3Q9UKA8 241 aa4.97□□□□□ -1.61
VPS4B-203ENST00000588323 UBA6A0AVT1 1052 aaPredicted RBP4.96□□□□□ -1.62
VPS4B-203ENST00000588323 TRAF5O00463 557 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 TGM1P22735 817 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 PTGS2P35354 604 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 ANTXR2P58335 489 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 SMAD3P84022 425 aaKnown RBP4.96□□□□□ -1.62
VPS4B-203ENST00000588323 SLC25A3Q00325 362 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 FKBP15Q5T1M5 1219 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 KRT40Q6A162 431 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 DDX53Q86TM3 631 aaKnown RBP4.96□□□□□ -1.62
VPS4B-203ENST00000588323 DYDC2Q96IM9 177 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 MAML3Q96JK9 1138 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 SRPK1Q96SB4 655 aaKnown RBP4.96□□□□□ -1.62
VPS4B-203ENST00000588323 PCIF1Q9H4Z3 704 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 IL23AQ9NPF7 189 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 KCMF1Q9P0J7 381 aa4.96□□□□□ -1.62
VPS4B-203ENST00000588323 B4E1Z4 1266 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 E9PSI1 815 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 M0R2C6 588 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 FOXN1O15353 648 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 ADAM8P78325 824 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 TOB2Q14106 344 aaPredicted RBP4.95□□□□□ -1.62
VPS4B-203ENST00000588323 TTC38Q5R3I4 469 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 LAIR1Q6GTX8 287 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 MFSD5Q6N075 450 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 PCSK4Q6UW60 755 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 PLA2G15Q8NCC3 412 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 THAP3Q8WTV1 239 aaPredicted RBP4.95□□□□□ -1.62
VPS4B-203ENST00000588323 HAS1Q92839 578 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 NKD2Q969F2 451 aaPredicted RBP4.95□□□□□ -1.62
VPS4B-203ENST00000588323 ARL8AQ96BM9 186 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 WDR92Q96MX6 357 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 TRIM39Q9HCM9 518 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 ACSS2Q9NR19 701 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 GPRC5BQ9NZH0 403 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 SAMD15Q9P1V8 674 aa4.95□□□□□ -1.62
VPS4B-203ENST00000588323 GOLGA6L6A8MZA4 724 aa4.94□□□□□ -1.62
VPS4B-203ENST00000588323 DAPK3O43293 454 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms