RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 DACT1Q9NYF0 836 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 RWDD3Q9Y3V2 267 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 TET1Q8NFU7 2136 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 LAMA3Q16787 3333 aa12.14□□□□□ -0.47
CLIP3-203ENST00000586457 A0A087WZ62 844 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 LINC01553A4QN01 128 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 DGAT1O75907 488 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 DARSP14868 501 aaKnown RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 CCT6AP40227 531 aaKnown RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 SARSP49591 514 aaKnown RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 HTRA4P83105 476 aaPredicted RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 PDIA5Q14554 519 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 MXD4Q14582 209 aaPredicted RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 EMC2Q15006 297 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 PTPROQ16827 1216 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 KRT79Q5XKE5 535 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 CATSPER4Q7RTX7 472 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 ZNF410Q86VK4 478 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 HSCBQ8IWL3 235 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 RNF169Q8NCN4 708 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 PRPF31Q8WWY3 499 aaKnown RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 TMEM143Q96AN5 459 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 HSD17B14Q9BPX1 270 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 FDXACB1Q9BRP7 624 aaPredicted RBP12.13□□□□□ -0.47
CLIP3-203ENST00000586457 ERVK-5Q9HDB9 667 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 RGS18Q9NS28 235 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 COL4A3BPQ9Y5P4 624 aa12.13□□□□□ -0.47
CLIP3-203ENST00000586457 SZT2Q5T011 3432 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 IGKV6-21A0A0C4DH24 114 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 RFXAPO00287 272 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 HOXA2O43364 376 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 STBD1O95210 358 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 LYPLA2O95372 231 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 SKIP12755 728 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 PHKA2P46019 1235 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 ERVK-21P61565 698 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 SPIRE1Q08AE8 756 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 ZRSR1Q15695 479 aaKnown RBP12.12□□□□□ -0.47
CLIP3-203ENST00000586457 PAN2Q504Q3 1202 aaKnown RBP12.12□□□□□ -0.47
CLIP3-203ENST00000586457 TWF2Q6IBS0 349 aaKnown RBP12.12□□□□□ -0.47
CLIP3-203ENST00000586457 FAM228AQ86W67 206 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 TMEM192Q8IY95 271 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 PIGOQ8TEQ8 1089 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 TMEM40Q8WWA1 233 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 CDK5RAP3Q96JB5 506 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 POLR3CQ9BUI4 534 aaPredicted RBP12.12□□□□□ -0.47
CLIP3-203ENST00000586457 ADAMTS10Q9H324 1103 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 CHST12Q9NRB3 414 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 AAASQ9NRG9 546 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 FOXD4L1Q9NU39 408 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 PCDHB6Q9Y5E3 794 aa12.12□□□□□ -0.47
CLIP3-203ENST00000586457 EVPLQ92817 2033 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 GBF1Q92538 1859 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 ARHGEF35A5YM69 484 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 K7ELQ4 463 aaPredicted RBP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 WNT7AO00755 349 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 ZBTB39O15060 712 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 DGKIO75912 1065 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 ERLIN2O94905 339 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 RPA1P27694 616 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 CTNNB1P35222 781 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 FXR2P51116 673 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 LAMTOR4Q0VGL1 99 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 DRP2Q13474 957 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 GPM6BQ13491 265 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 NBR1Q14596 966 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 TMEM132AQ24JP5 1023 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 EPC2Q52LR7 807 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 MAEAQ7L5Y9 396 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 BRAPQ7Z569 592 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 RTN4RL1Q86UN2 441 aaPredicted RBP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 CATSPER3Q86XQ3 398 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 KSR1Q8IVT5 923 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 LINC01465Q8N7H1 131 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 ZNF579Q8NAF0 562 aaKnown RBP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 RNF149Q8NC42 400 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 RASSF8Q8NHQ8 419 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 SNX29Q8TEQ0 813 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 C17orf80Q9BSJ5 609 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 TMX1Q9H3N1 280 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 DHX33Q9H6R0 707 aaKnown RBP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 WRAP73Q9P2S5 460 aaPredicted RBP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 DNM3Q9UQ16 869 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 PIN4Q9Y237 131 aaKnown RBP12.11□□□□□ -0.47
CLIP3-203ENST00000586457 ADGRA3Q8IWK6 1321 aa12.11□□□□□ -0.47
CLIP3-203ENST00000586457 TBKBP1A7MCY6 615 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 USO1O60763 962 aaKnown RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 CSDE1O75534 798 aaKnown RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 BMP15O95972 392 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 RB1P06400 928 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 MUTP22033 750 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 FGFR4P22455 802 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 PRPHP41219 470 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 TOB1P50616 345 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 GRB10Q13322 594 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 MKRN4PQ13434 485 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-203ENST00000586457 CUL4AQ13619 759 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 FAM102BQ5T8I3 360 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 SRGAP1Q7Z6B7 1085 aa12.1□□□□□ -0.47
CLIP3-203ENST00000586457 FERMT3Q86UX7 667 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms