RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 NOP56O00567 594 aaKnown RBP11.58□□□□□ -0.56
SS18-217ENST00000580958 CETN3O15182 167 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 LGR5O75473 907 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 PPP1R37O75864 691 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 DGAT1O75907 488 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 SNAI1O95863 264 aaPredicted RBP11.58□□□□□ -0.56
SS18-217ENST00000580958 SFPQP23246 707 aaKnown RBP eCLIP11.58□□□□□ -0.56
SS18-217ENST00000580958 STAT5BP51692 787 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 PEX3P56589 373 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 SOX10P56693 466 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 INHBEP58166 350 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 CCZ1BP86790 482 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 CCZ1P86791 482 aaPredicted RBP11.58□□□□□ -0.56
SS18-217ENST00000580958 SREBF2Q12772 1141 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 GRM1Q13255 1194 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 ADAM9Q13443 819 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 MAN2A1Q16706 1144 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 C17orf99Q6UX52 265 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 MAMDC4Q6UXC1 1216 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 PAXIP1Q6ZW49 1069 aaPredicted RBP11.58□□□□□ -0.56
SS18-217ENST00000580958 AFAP1L1Q8TED9 768 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 MAML3Q96JK9 1138 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 STRA6Q9BX79 667 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 KATNBL1Q9H079 304 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 IKZF4Q9H2S9 585 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 ATP6V0A4Q9HBG4 840 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 ZFYVE28Q9HCC9 887 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 XPNPEP1Q9NQW7 623 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 LARSQ9P2J5 1176 aaKnown RBP11.58□□□□□ -0.56
SS18-217ENST00000580958 TRAF3IP3Q9Y228 551 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 ITIH6Q6UXX5 1313 aa11.58□□□□□ -0.56
SS18-217ENST00000580958 CLIC2O15247 247 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 SLC16A4O15374 487 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 TGFB1I1O43294 461 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 TLR2O60603 784 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 GNA14O95837 355 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 NR3C1P04150 777 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 NR2F2P24468 414 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 DNM2P50570 870 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 ARHGAP1Q07960 439 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 MAP2K5Q13163 448 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 ALCAMQ13740 583 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 EMC2Q15006 297 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 HSDL1Q3SXM5 330 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 VWA3BQ502W6 1294 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 MIIPQ5JXC2 388 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 MORN1Q5T089 497 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 GJC2Q5T442 439 aaPredicted RBP11.57□□□□□ -0.56
SS18-217ENST00000580958 CEP135Q66GS9 1140 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 PPFIBP1Q86W92 1011 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 C17orf53Q8N3J3 647 aaPredicted RBP11.57□□□□□ -0.56
SS18-217ENST00000580958 MCPH1Q8NEM0 835 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 BSNDQ8WZ55 320 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 KIFAP3Q92845 792 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 FAM167AQ96KS9 214 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 SPATA33Q96N06 139 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 TINF2Q9BSI4 451 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 NIFKQ9BYG3 293 aaKnown RBP11.57□□□□□ -0.56
SS18-217ENST00000580958 POLR3FQ9H1D9 316 aaPredicted RBP11.57□□□□□ -0.56
SS18-217ENST00000580958 AZI2Q9H6S1 392 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 PDLIM7Q9NR12 457 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 NRBP2Q9NSY0 501 aa11.57□□□□□ -0.56
SS18-217ENST00000580958 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.56□□□□□ -0.56
SS18-217ENST00000580958 A0A1W2PQC6 194 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 CCDC169A6NNP5 214 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 GH1P01241 217 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 RPL13P26373 211 aaKnown RBP11.56□□□□□ -0.56
SS18-217ENST00000580958 MARK3P27448 753 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 ADCYAP1R1P41586 468 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 TM4SF4P48230 202 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 POLGP54098 1239 aaPredicted RBP11.56□□□□□ -0.56
SS18-217ENST00000580958 NCKAP1LP55160 1127 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 ADKP55263 362 aaKnown RBP11.56□□□□□ -0.56
SS18-217ENST00000580958 RBL2Q08999 1139 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 TBC1D8BQ0IIM8 1120 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 CRHR2Q13324 411 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 NFIL3Q16649 462 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 CYP4F22Q6NT55 531 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 HAUS6Q7Z4H7 955 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 TRIM50Q86XT4 487 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 SYCP3Q8IZU3 236 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 TC2NQ8N9U0 490 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 KIAA1524Q8TCG1 905 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 CPLX3Q8WVH0 158 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 GLG1Q92896 1179 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 HHIPL1Q96JK4 782 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 ACCSQ96QU6 501 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 CEP89Q96ST8 783 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 SLC5A4Q9NY91 659 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 ZHX1Q9UKY1 873 aaPredicted RBP11.56□□□□□ -0.56
SS18-217ENST00000580958 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.56□□□□□ -0.56
SS18-217ENST00000580958 EMSYQ7Z589 1322 aa11.56□□□□□ -0.56
SS18-217ENST00000580958 AKR1B15C9JRZ8 316 aaPredicted RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 ZNF500O60304 480 aaPredicted RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 SKILP12757 684 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 RFC5P40937 340 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 NPTX2P47972 431 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 CASP4P49662 377 aa11.55□□□□□ -0.56
SS18-217ENST00000580958 MARSP56192 900 aaKnown RBP11.55□□□□□ -0.56
SS18-217ENST00000580958 GTF2BQ00403 316 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms