RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZNF579Q8NAF0 562 aaKnown RBP26.73■■□□□ 1.87
SHMT1-206ENST00000579558 SLC7A3Q8WY07 619 aa26.73■■□□□ 1.87
SHMT1-206ENST00000579558 RC3H2Q9HBD1 1191 aaKnown RBP26.73■■□□□ 1.87
SHMT1-206ENST00000579558 C1orf112Q9NSG2 853 aa26.73■■□□□ 1.87
SHMT1-206ENST00000579558 LRFN2Q9ULH4 789 aa26.73■■□□□ 1.87
SHMT1-206ENST00000579558 POTEMA6NI47 508 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 DGKIO75912 1065 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 OR52Z1P0C646 297 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 DARSP14868 501 aaKnown RBP26.72■■□□□ 1.87
SHMT1-206ENST00000579558 GJB2P29033 226 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 SARSP49591 514 aaKnown RBP26.72■■□□□ 1.87
SHMT1-206ENST00000579558 POLGP54098 1239 aaPredicted RBP26.72■■□□□ 1.87
SHMT1-206ENST00000579558 CDC42EP1Q00587 391 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 XKR9Q5GH70 373 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 EXOC8Q8IYI6 725 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 ZNF689Q96CS4 500 aaPredicted RBP26.72■■□□□ 1.87
SHMT1-206ENST00000579558 HSD17B14Q9BPX1 270 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 RGS18Q9NS28 235 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 NLRC5Q86WI3 1866 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 TRANK1O15050 2925 aa26.72■■□□□ 1.87
SHMT1-206ENST00000579558 VCANP13611 3396 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 ZBTB39O15060 712 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 RFC5P40937 340 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 BTG3Q14201 252 aaPredicted RBP26.71■■□□□ 1.87
SHMT1-206ENST00000579558 EPC2Q52LR7 807 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 RHPN2Q8IUC4 686 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 CRIPAKQ8N1N5 446 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 GCOM2Q9BZD3 368 aaPredicted RBP26.71■■□□□ 1.87
SHMT1-206ENST00000579558 DHX33Q9H6R0 707 aaKnown RBP26.71■■□□□ 1.87
SHMT1-206ENST00000579558 ARID2Q68CP9 1835 aa26.71■■□□□ 1.87
SHMT1-206ENST00000579558 RALGAPA2Q2PPJ7 1873 aa26.7■■□□□ 1.87
SHMT1-206ENST00000579558 SLC24A5Q71RS6 500 aa26.7■■□□□ 1.86
SHMT1-206ENST00000579558 TMEM192Q8IY95 271 aa26.7■■□□□ 1.86
SHMT1-206ENST00000579558 BMP2KQ9NSY1 1161 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-206ENST00000579558 RNF216Q9NWF9 866 aaPredicted RBP26.7■■□□□ 1.86
SHMT1-206ENST00000579558 SMC3Q9UQE7 1217 aa26.7■■□□□ 1.86
SHMT1-206ENST00000579558 PCDHB7Q9Y5E2 793 aa26.7■■□□□ 1.86
SHMT1-206ENST00000579558 PRUNE2Q8WUY3 3088 aa26.7■■□□□ 1.86
SHMT1-206ENST00000579558 PRRC2BQ5JSZ5 2229 aaKnown RBP26.7■■□□□ 1.86
SHMT1-206ENST00000579558 A0A087WZ62 844 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 C9IYK1 514 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 LYPLA2O95372 231 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 TECP42680 631 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 DSC3Q14574 896 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 NBR1Q14596 966 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 MCTP1Q6DN14 999 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 ZNF410Q86VK4 478 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 FDXACB1Q9BRP7 624 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-206ENST00000579558 PRDM6Q9NQX0 595 aa26.69■■□□□ 1.86
SHMT1-206ENST00000579558 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-206ENST00000579558 ZSCAN20P17040 1043 aaPredicted RBP26.68■■□□□ 1.86
SHMT1-206ENST00000579558 FGFR4P22455 802 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 CTNNB1P35222 781 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 EMC2Q15006 297 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 KSR1Q8IVT5 923 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 CMTR2Q8IYT2 770 aaKnown RBP26.68■■□□□ 1.86
SHMT1-206ENST00000579558 TMEM143Q96AN5 459 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 NLRP4Q96MN2 994 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 CCDC43Q96MW1 224 aaKnown RBP26.68■■□□□ 1.86
SHMT1-206ENST00000579558 LMCD1Q9NZU5 365 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 GTF3C3Q9Y5Q9 886 aa26.68■■□□□ 1.86
SHMT1-206ENST00000579558 H3BQV1 296 aa26.67■■□□□ 1.86
SHMT1-206ENST00000579558 GAS2O43903 313 aaKnown RBP26.67■■□□□ 1.86
SHMT1-206ENST00000579558 CSDE1O75534 798 aaKnown RBP26.67■■□□□ 1.86
SHMT1-206ENST00000579558 PAN2Q504Q3 1202 aaKnown RBP26.67■■□□□ 1.86
SHMT1-206ENST00000579558 PSPC1Q8WXF1 523 aaKnown RBP26.67■■□□□ 1.86
SHMT1-206ENST00000579558 ANKEF1Q9NU02 776 aa26.67■■□□□ 1.86
SHMT1-206ENST00000579558 RWDD3Q9Y3V2 267 aa26.67■■□□□ 1.86
SHMT1-206ENST00000579558 COL4A3BPQ9Y5P4 624 aa26.67■■□□□ 1.86
SHMT1-206ENST00000579558 GATMP50440 423 aa26.66■■□□□ 1.86
SHMT1-206ENST00000579558 TOB1P50616 345 aaPredicted RBP26.66■■□□□ 1.86
SHMT1-206ENST00000579558 GPM6BQ13491 265 aa26.66■■□□□ 1.86
SHMT1-206ENST00000579558 TCP11Q8WWU5 503 aa26.66■■□□□ 1.86
SHMT1-206ENST00000579558 CLP1Q92989 425 aaKnown RBP26.66■■□□□ 1.86
SHMT1-206ENST00000579558 MTRQ99707 1265 aa26.66■■□□□ 1.86
SHMT1-206ENST00000579558 INO80BQ9C086 356 aaPredicted RBP26.66■■□□□ 1.86
SHMT1-206ENST00000579558 TUFT1Q9NNX1 390 aa26.66■■□□□ 1.86
SHMT1-206ENST00000579558 PCDHB6Q9Y5E3 794 aa26.66■■□□□ 1.86
SHMT1-206ENST00000579558 H3BNC9 293 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 LINC00271P0C7V0 271 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 SFPQP23246 707 aaKnown RBP eCLIP26.65■■□□□ 1.86
SHMT1-206ENST00000579558 FAM189BP81408 668 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 SKIV2LQ15477 1246 aaKnown RBP26.65■■□□□ 1.86
SHMT1-206ENST00000579558 C4orf32Q8N8J7 132 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 ERMNQ8TAM6 284 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 PIGOQ8TEQ8 1089 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 PRPF31Q8WWY3 499 aaKnown RBP26.65■■□□□ 1.86
SHMT1-206ENST00000579558 ATP6V0A4Q9HBG4 840 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 TMEM161AQ9NX61 479 aa26.65■■□□□ 1.86
SHMT1-206ENST00000579558 MRPL42Q9Y6G3 142 aaKnown RBP26.65■■□□□ 1.86
SHMT1-206ENST00000579558 MED24O75448 989 aa26.64■■□□□ 1.86
SHMT1-206ENST00000579558 SPATA31C1P0DKV0 1188 aa26.64■■□□□ 1.86
SHMT1-206ENST00000579558 BMPR1AP36894 532 aa26.64■■□□□ 1.86
SHMT1-206ENST00000579558 CATSPER3Q86XQ3 398 aa26.64■■□□□ 1.86
SHMT1-206ENST00000579558 ELAC1Q9H777 363 aaKnown RBP26.64■■□□□ 1.86
SHMT1-206ENST00000579558 THEGQ9P2T0 379 aa26.64■■□□□ 1.86
SHMT1-206ENST00000579558 A0A087WWV3 80 aa26.63■■□□□ 1.85
SHMT1-206ENST00000579558 C5orf67F2Z3F1 127 aa26.63■■□□□ 1.85
SHMT1-206ENST00000579558 RB1P06400 928 aa26.63■■□□□ 1.85
SHMT1-206ENST00000579558 RARRES1P49788 294 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms