RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 SPATA1Q5VX52 437 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 ZNF720Q7Z2F6 126 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 RNF180Q86T96 592 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 DHX40Q8IX18 779 aaKnown RBP16.87■□□□□ 0.29
SS18-206ENST00000577572 GOLGA5Q8TBA6 731 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 NOC3LQ8WTT2 800 aaKnown RBP16.87■□□□□ 0.29
SS18-206ENST00000577572 TSEN34Q9BSV6 310 aaKnown RBP16.87■□□□□ 0.29
SS18-206ENST00000577572 MTG1Q9BT17 334 aaPredicted RBP16.87■□□□□ 0.29
SS18-206ENST00000577572 STRA6Q9BX79 667 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 SLC39A2Q9NP94 309 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 XPNPEP1Q9NQW7 623 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 CGNQ9P2M7 1197 aaKnown RBP16.87■□□□□ 0.29
SS18-206ENST00000577572 PTCH2Q9Y6C5 1203 aa16.87■□□□□ 0.29
SS18-206ENST00000577572 RSPH10B2B2RC85 870 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 FGFR1OPO95684 399 aaKnown RBP16.86■□□□□ 0.29
SS18-206ENST00000577572 RSPH10BP0C881 870 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 ZNF286BP0CG31 522 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 INSRRP14616 1297 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 CD44P16070 742 aaKnown RBP16.86■□□□□ 0.29
SS18-206ENST00000577572 CAPN2P17655 700 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 TMOD1P28289 359 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 CCND3P30281 292 aaPredicted RBP16.86■□□□□ 0.29
SS18-206ENST00000577572 NAMPTP43490 491 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 NCKAP1LP55160 1127 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 POU5F1BQ06416 359 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 RAD51AP2Q09MP3 1159 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 TRIM32Q13049 653 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 MFSD10Q14728 455 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 TMEM174Q8WUU8 243 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 NELFBQ8WX92 580 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 PSPC1Q8WXF1 523 aaKnown RBP16.86■□□□□ 0.29
SS18-206ENST00000577572 KAT2BQ92831 832 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 P2RX5Q93086 422 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 FIZ1Q96SL8 496 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 SEZ6LQ9BYH1 1024 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 TMEM206Q9H813 350 aa16.86■□□□□ 0.29
SS18-206ENST00000577572 MOXD2PA6NHM9 499 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 PPP1R37O75864 691 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 C22orf31O95567 290 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 PSEN2P49810 448 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 GTF2BQ00403 316 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 CACNB1Q02641 598 aaPredicted RBP16.85■□□□□ 0.29
SS18-206ENST00000577572 PPFIA1Q13136 1202 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 NCAPHQ15003 741 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 NFIL3Q16649 462 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 CCSAPQ6IQ19 270 aaPredicted RBP16.85■□□□□ 0.29
SS18-206ENST00000577572 SESTD1Q86VW0 696 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 ARRDC4Q8NCT1 418 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 RNF214Q8ND24 703 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 SCFD1Q8WVM8 642 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 TSG101Q99816 390 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 WDR81Q562E7 1941 aa16.85■□□□□ 0.29
SS18-206ENST00000577572 PDXKO00764 312 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 GCNT3O95395 438 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 MYL3P08590 195 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 PTGS1P23219 599 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 HOXC8P31273 242 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 NPTX2P47972 431 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 CTCFP49711 727 aaPredicted RBP16.84■□□□□ 0.29
SS18-206ENST00000577572 EFNA5P52803 228 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 TFDP1Q14186 410 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 MYBPC2Q14324 1141 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 GRIK4Q16099 956 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 KNOP1Q1ED39 458 aaKnown RBP16.84■□□□□ 0.29
SS18-206ENST00000577572 KIAA0753Q2KHM9 967 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 EDRF1Q3B7T1 1238 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 TRMT1LQ7Z2T5 733 aaKnown RBP16.84■□□□□ 0.29
SS18-206ENST00000577572 CTU1Q7Z7A3 348 aaKnown RBP16.84■□□□□ 0.29
SS18-206ENST00000577572 LUZP1Q86V48 1076 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 SMYD4Q8IYR2 804 aaPredicted RBP16.84■□□□□ 0.29
SS18-206ENST00000577572 AOPEPQ8N6M6 819 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 NFKBIZQ9BYH8 718 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 POLR3FQ9H1D9 316 aaPredicted RBP16.84■□□□□ 0.29
SS18-206ENST00000577572 KMT5AQ9NQR1 393 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 TSKSQ9UJT2 592 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 EXOC7Q9UPT5 735 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 TRAF3IP3Q9Y228 551 aa16.84■□□□□ 0.29
SS18-206ENST00000577572 MBLAC1A4D2B0 266 aaPredicted RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 SFI1A8K8P3 1242 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 HSPA8P11142 646 aaKnown RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 PRKCSHP14314 528 aaPredicted RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 KLRC1P26715 233 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 PEX3P56589 373 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 PTPN11Q06124 597 aaPredicted RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 SPAG1Q07617 926 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 HSP90AA2PQ14568 343 aaPredicted RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 LHX8Q68G74 356 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 KLHL10Q6JEL2 608 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 TTI2Q6NXR4 508 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 MTHFD1LQ6UB35 978 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 HAUS6Q7Z4H7 955 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 LINC01465Q8N7H1 131 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 ANP32BQ92688 251 aaKnown RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 HPS3Q969F9 1004 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 LENG1Q96BZ8 264 aaPredicted RBP16.83■□□□□ 0.28
SS18-206ENST00000577572 SH2D3AQ9BRG2 576 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 C2orf40Q9H1Z8 148 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 THAP9Q9H5L6 903 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 TMEM134Q9H6X4 195 aa16.83■□□□□ 0.28
SS18-206ENST00000577572 TYW1Q9NV66 732 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms