RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TNFRSF1AP19438 455 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 SLC9A1P19634 815 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 EPHA7Q15375 998 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 TIGD7Q6NT04 549 aaPredicted RBP4.55□□□□□ -1.68
NUP88-209ENST00000574855 KLHDC10Q6PID8 442 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 SPRED1Q7Z699 444 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 LRRTM3Q86VH5 581 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 ZZZ3Q8IYH5 903 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 OR14K1Q8NGZ2 314 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 NINJ1Q92982 152 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 LPPQ93052 612 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 GFM2Q969S9 779 aaKnown RBP4.55□□□□□ -1.68
NUP88-209ENST00000574855 OR14A2Q96R54 314 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 ADOQ96SZ5 270 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 ELF4Q99607 663 aaPredicted RBP4.55□□□□□ -1.68
NUP88-209ENST00000574855 NELFAQ9H3P2 528 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 MYH16Q9H6N6 1097 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 SLC52A1Q9NWF4 448 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 OXSMQ9NWU1 459 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 KCMF1Q9P0J7 381 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 SPO11Q9Y5K1 396 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 MATN3O15232 486 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 TPD52L2O43399 206 aaKnown RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 SLC26A4O43511 780 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 KPNA6O60684 536 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 CDC45O75419 566 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 F2P00734 622 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 POU3F2P20265 443 aaPredicted RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 BCAR1P56945 870 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 ADAM15Q13444 863 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 R3HDM1Q15032 1099 aaKnown RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 DGKDQ16760 1214 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 TKFCQ3LXA3 575 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 PRAMEF9Q5VWM5 478 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 CNNM4Q6P4Q7 775 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 POLNQ7Z5Q5 900 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 PHYKPLQ8IUZ5 450 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 PASD1Q8IV76 773 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 NIM1KQ8IY84 436 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 BCL6BQ8N143 479 aaPredicted RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 CFHR4Q92496 578 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 RPGRQ92834 1020 aaKnown RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 EDAQ92838 391 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 FEZ1Q99689 392 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 PLA2G12BQ9BX93 195 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 TOMM22Q9NS69 142 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 PLA2G3Q9NZ20 509 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 DENND2AQ9ULE3 1009 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 SYNPO2Q9UMS6 1093 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 CTDP1Q9Y5B0 961 aaPredicted RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 MRPL42Q9Y6G3 142 aaKnown RBP4.54□□□□□ -1.68
NUP88-209ENST00000574855 SLC30A1Q9Y6M5 507 aa4.54□□□□□ -1.68
NUP88-209ENST00000574855 ATP2A2P16615 1042 aaKnown RBP4.53□□□□□ -1.68
NUP88-209ENST00000574855 ACO1P21399 889 aaKnown RBP4.53□□□□□ -1.68
NUP88-209ENST00000574855 ZXDAP98168 799 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 HGFACQ04756 655 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 SART3Q15020 963 aaKnown RBP4.53□□□□□ -1.68
NUP88-209ENST00000574855 SPDYAQ5MJ70 313 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 AHI1Q8N157 1196 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 PPM1KQ8N3J5 372 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 C7orf31Q8N865 590 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 OR5AN1Q8NGI8 311 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 RABGGTAQ92696 567 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 GCDHQ92947 438 aaPredicted RBP4.53□□□□□ -1.68
NUP88-209ENST00000574855 FAM89AQ96GI7 184 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 DYDC2Q96IM9 177 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 MTFR1LQ9H019 292 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 TMPRSS5Q9H3S3 457 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 MAGEL2Q9UJ55 1249 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 PLAAQ9Y263 795 aa4.53□□□□□ -1.68
NUP88-209ENST00000574855 A0A0U1RQG5 324 aaPredicted RBP4.52□□□□□ -1.69
NUP88-209ENST00000574855 APOL3O95236 402 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 SCNN1BP51168 640 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 ADCY7P51828 1080 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 ANTXR2P58335 489 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 ATP2C1P98194 919 aaPredicted RBP4.52□□□□□ -1.69
NUP88-209ENST00000574855 DSG1Q02413 1049 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 HHEXQ03014 270 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 ADCY2Q08462 1091 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 DUSP8Q13202 625 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 GRM7Q14831 915 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 BMP8AQ7Z5Y6 402 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 NOP9Q86U38 636 aaKnown RBP4.52□□□□□ -1.69
NUP88-209ENST00000574855 GPR135Q8IZ08 494 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 NXPE1Q8N323 547 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 EFHBQ8N7U6 833 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 SHCBP1Q8NEM2 672 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 SLC7A6OSQ96CW6 309 aaPredicted RBP4.52□□□□□ -1.69
NUP88-209ENST00000574855 SLC6A15Q9H2J7 730 aa4.52□□□□□ -1.69
NUP88-209ENST00000574855 GOLGA8BA8MQT2 603 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 DAPK3O43293 454 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 PRPF6O94906 941 aaKnown RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 AMHP03971 560 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 CD40P25942 277 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 MSX2P35548 267 aaPredicted RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 KPNA1P52294 538 aaPredicted RBP4.51□□□□□ -1.69
NUP88-209ENST00000574855 OCRLQ01968 901 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 FOXL1Q12952 345 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 MYBPC3Q14896 1274 aa4.51□□□□□ -1.69
NUP88-209ENST00000574855 DALRD3Q5D0E6 543 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms