RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RBM10P98175 930 aaKnown RBP23.8■■□□□ 1.4
VPS53-216ENST00000574029 KCNC3Q14003 757 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 TMEM184AQ6ZMB5 413 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 SUSD6Q92537 303 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 CCDC136Q96JN2 1154 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 MFSD14AQ96MC6 490 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 FBXL18Q96ME1 805 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 PHF7Q9BWX1 381 aaPredicted RBP23.8■■□□□ 1.4
VPS53-216ENST00000574029 SLC26A6Q9BXS9 759 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 SH3GLB2Q9NR46 395 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 MUC6Q6W4X9 2439 aa23.8■■□□□ 1.4
VPS53-216ENST00000574029 ATF7P17544 494 aaPredicted RBP23.79■■□□□ 1.4
VPS53-216ENST00000574029 PDIA3P30101 505 aaKnown RBP23.79■■□□□ 1.4
VPS53-216ENST00000574029 SFNP31947 248 aa23.79■■□□□ 1.4
VPS53-216ENST00000574029 GPC3P51654 580 aa23.79■■□□□ 1.4
VPS53-216ENST00000574029 PRKCEQ02156 737 aa23.79■■□□□ 1.4
VPS53-216ENST00000574029 UGCGQ16739 394 aa23.79■■□□□ 1.4
VPS53-216ENST00000574029 ALYREFQ86V81 257 aaKnown RBP23.79■■□□□ 1.4
VPS53-216ENST00000574029 ECHDC2Q86YB7 292 aa23.79■■□□□ 1.4
VPS53-216ENST00000574029 GAS7O60861 476 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 DARSP14868 501 aaKnown RBP23.78■■□□□ 1.4
VPS53-216ENST00000574029 PSMA5P28066 241 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 JAK3P52333 1124 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 KCNT2Q6UVM3 1135 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 BMP8AQ7Z5Y6 402 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 LRRC43Q8N309 656 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 TEKT3Q9BXF9 490 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 UNC45AQ9H3U1 944 aa23.78■■□□□ 1.4
VPS53-216ENST00000574029 PUF60Q9UHX1 559 aaKnown RBP23.78■■□□□ 1.4
VPS53-216ENST00000574029 TECTAO75443 2155 aa23.77■■□□□ 1.4
VPS53-216ENST00000574029 CENPBP07199 599 aaPredicted RBP23.77■■□□□ 1.4
VPS53-216ENST00000574029 NHLH1Q02575 133 aa23.77■■□□□ 1.4
VPS53-216ENST00000574029 TARBP2Q15633 366 aaKnown RBP23.77■■□□□ 1.4
VPS53-216ENST00000574029 LRCH2Q5VUJ6 765 aa23.77■■□□□ 1.4
VPS53-216ENST00000574029 PLPP4Q5VZY2 271 aa23.77■■□□□ 1.4
VPS53-216ENST00000574029 TRIM67Q6ZTA4 783 aa23.77■■□□□ 1.4
VPS53-216ENST00000574029 ZNF668Q96K58 619 aaPredicted RBP23.77■■□□□ 1.4
VPS53-216ENST00000574029 TCF25Q9BQ70 676 aa23.77■■□□□ 1.4
VPS53-216ENST00000574029 NCOA5Q9HCD5 579 aaKnown RBP23.77■■□□□ 1.4
VPS53-216ENST00000574029 ZNF318Q5VUA4 2279 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 CHMP2AO43633 222 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 PSMD10O75832 226 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 PPM1AP35813 382 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 NLRP5P59047 1200 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 CCT2P78371 535 aaKnown RBP23.76■■□□□ 1.39
VPS53-216ENST00000574029 ZXDAP98168 799 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 TBC1D8BQ0IIM8 1120 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 Q4G0T1 1027 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 CLLU1OSQ5K130 101 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 ABI1Q8IZP0 508 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 RDM1Q8NG50 284 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 ZNF558Q96NG5 402 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 S1PR5Q9H228 398 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 NGRNQ9NPE2 291 aaKnown RBP23.76■■□□□ 1.39
VPS53-216ENST00000574029 ENTPD7Q9NQZ7 604 aa23.76■■□□□ 1.39
VPS53-216ENST00000574029 A0A0U1RQF3 1178 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 EOMESO95936 686 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 SRGAP2BP0DMP2 458 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 ANKRD54Q6NXT1 300 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 ZNF598Q86UK7 904 aaKnown RBP23.75■■□□□ 1.39
VPS53-216ENST00000574029 TBCKQ8TEA7 893 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 GJA10Q969M2 543 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 RPGRIP1Q96KN7 1286 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 NIFKQ9BYG3 293 aaKnown RBP23.75■■□□□ 1.39
VPS53-216ENST00000574029 C22orf23Q9BZE7 217 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 SPG21Q9NZD8 308 aa23.75■■□□□ 1.39
VPS53-216ENST00000574029 CYP3A7-CYP3A51PA0A087WV96 503 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 TMEM221A6NGB7 291 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 HIDE1A8MVS5 230 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 M0R296 226 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 CYP3A7P24462 503 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 PBX3P40426 434 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 KRT17Q04695 432 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 B3GNT9Q6UX72 402 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 SCLT1Q96NL6 688 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 CEP89Q96ST8 783 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 PCDHA4Q9UN74 947 aa23.74■■□□□ 1.39
VPS53-216ENST00000574029 REC8O95072 547 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 STBD1O95210 358 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 FGFR4P22455 802 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 TECP42680 631 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 CDC42EP1Q00587 391 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 DRP2Q13474 957 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 TOB2Q14106 344 aaPredicted RBP23.73■■□□□ 1.39
VPS53-216ENST00000574029 XKR3Q5GH77 459 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 SYCE2Q6PIF2 218 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 RUFY3Q7L099 469 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 MIER3Q7Z3K6 550 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 TRIM22Q8IYM9 498 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 SLC39A11Q8N1S5 342 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 RNF169Q8NCN4 708 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 NLRP7Q8WX94 980 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 DACT1Q9NYF0 836 aa23.73■■□□□ 1.39
VPS53-216ENST00000574029 IGKV6-21A0A0C4DH24 114 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 M0R2N6 131 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 TDP2O95551 362 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 MRE11P49959 708 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 SSRP1Q08945 709 aaKnown RBP23.72■■□□□ 1.39
VPS53-216ENST00000574029 MTERF2Q49AM1 385 aa23.72■■□□□ 1.39
VPS53-216ENST00000574029 TMC7Q7Z402 723 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms