RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SPIRE2Q8WWL2 714 aa15.1■□□□□ 0.01
CCDC40-209ENST00000573474 IFT74Q96LB3 600 aa15.1■□□□□ 0.01
CCDC40-209ENST00000573474 DUSP9Q99956 384 aaKnown RBP15.1■□□□□ 0.01
CCDC40-209ENST00000573474 NTPCRQ9BSD7 190 aaKnown RBP15.1■□□□□ 0.01
CCDC40-209ENST00000573474 STRA6Q9BX79 667 aa15.1■□□□□ 0.01
CCDC40-209ENST00000573474 POLR3FQ9H1D9 316 aaPredicted RBP15.1■□□□□ 0.01
CCDC40-209ENST00000573474 ST6GALNAC4Q9H4F1 302 aa15.1■□□□□ 0.01
CCDC40-209ENST00000573474 SPC25Q9HBM1 224 aa15.1■□□□□ 0.01
CCDC40-209ENST00000573474 SAMSN1Q9NSI8 373 aaKnown RBP15.1■□□□□ 0.01
CCDC40-209ENST00000573474 COL1A2P08123 1366 aa15.1■□□□□ 0.01
CCDC40-209ENST00000573474 IGKV6-21A0A0C4DH24 114 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 K7ENM7 598 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 AP5Z1O43299 807 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 KPNA6O60684 536 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 PRPF6O94906 941 aaKnown RBP15.09■□□□□ 0.01
CCDC40-209ENST00000573474 FGFR1OPO95684 399 aaKnown RBP15.09■□□□□ 0.01
CCDC40-209ENST00000573474 RARBP10826 455 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 INSRRP14616 1297 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 CDK11BP21127 795 aaKnown RBP15.09■□□□□ 0.01
CCDC40-209ENST00000573474 ARL2P36404 184 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 NCKAP1LP55160 1127 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 PEX3P56589 373 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 SOX10P56693 466 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 NKX3-2P78367 333 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 FSCN1Q16658 493 aaKnown RBP15.09■□□□□ 0.01
CCDC40-209ENST00000573474 KNOP1Q1ED39 458 aaKnown RBP15.09■□□□□ 0.01
CCDC40-209ENST00000573474 MAP3K21Q5TCX8 1036 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 CDKAL1Q5VV42 579 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 IER5Q5VY09 327 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 PPP4R3CPQ6ZMV5 832 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 NELFCDQ8IXH7 590 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 CSGALNACT2Q8N6G5 542 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 SLAIN1Q8ND83 568 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 TCP11Q8WWU5 503 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 TMEM143Q96AN5 459 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 UPF3AQ9H1J1 476 aaKnown RBP15.09■□□□□ 0.01
CCDC40-209ENST00000573474 KCTD10Q9H3F6 313 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 THAP9Q9H5L6 903 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 WBP1LQ9NX94 342 aa15.09■□□□□ 0.01
CCDC40-209ENST00000573474 CCDC169A6NNP5 214 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 H0YCG3 227 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 PDXKO00764 312 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 MAGEB2O15479 319 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 PPP1R37O75864 691 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 ADCY5O95622 1261 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 F2P00734 622 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 MYL3P08590 195 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 ATP1A3P13637 1013 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 CCND3P30281 292 aaPredicted RBP15.08■□□□□ 0
CCDC40-209ENST00000573474 HOXD13P35453 343 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 NPTX2P47972 431 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 GTF2BQ00403 316 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 PPP2R5AQ15172 486 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 ZCWPW2Q504Y3 356 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 ZC2HC1CQ53FD0 456 aaPredicted RBP15.08■□□□□ 0
CCDC40-209ENST00000573474 HAUS6Q7Z4H7 955 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 BSNDQ8WZ55 320 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 ACCSQ96QU6 501 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 SRRTQ9BXP5 876 aaKnown RBP15.08■□□□□ 0
CCDC40-209ENST00000573474 TRIM5Q9C035 493 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 KMT5AQ9NQR1 393 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 TSKSQ9UJT2 592 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 ARID2Q68CP9 1835 aa15.08■□□□□ 0
CCDC40-209ENST00000573474 RRN3P2A6NIE6 340 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 SLC16A4O15374 487 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 CALUO43852 315 aaPredicted RBP15.07■□□□□ 0
CCDC40-209ENST00000573474 ZEB2O60315 1214 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 C6orf222P0C671 652 aaPredicted RBP15.07■□□□□ 0
CCDC40-209ENST00000573474 SCP2P22307 547 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 ABCD1P33897 745 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 DNM2P50570 870 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 ZNF75DP51815 510 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 FANCCQ00597 558 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 BEX3Q00994 111 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 SPAG1Q07617 926 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 PPFIA1Q13136 1202 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 FAM114A1Q8IWE2 563 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 RETREG2Q8NC44 543 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 TMEM161BQ8NDZ6 487 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 TRAPPC12Q8WVT3 735 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 KAT2BQ92831 832 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 HVCN1Q96D96 273 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 KATNAL1Q9BW62 490 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 TMEM206Q9H813 350 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 SUGCTQ9HAC7 445 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 TYW1Q9NV66 732 aaKnown RBP15.07■□□□□ 0
CCDC40-209ENST00000573474 TRAF3IP3Q9Y228 551 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 TRIM17Q9Y577 477 aa15.07■□□□□ 0
CCDC40-209ENST00000573474 HAS3O00219 553 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 CBFA2T2O43439 604 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 C22orf31O95567 290 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 SERPINC1P01008 464 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 GLRA2P23416 452 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 KLRC1P26715 233 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 GRK4P32298 578 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 NAMPTP43490 491 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 PSEN2P49810 448 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 IGBP1P78318 339 aa15.06■□□□□ 0
CCDC40-209ENST00000573474 IRX5P78411 483 aaPredicted RBP15.06■□□□□ 0
CCDC40-209ENST00000573474 FKBP3Q00688 224 aaKnown RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms