RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RINT1Q6NUQ1 792 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 CCDC13Q8IYE1 715 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 CNPY4Q8N129 248 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 PRPF38AQ8NAV1 312 aaKnown RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 RAPGEF5Q92565 580 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 THAP2Q9H0W7 228 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 SLC12A6Q9UHW9 1150 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 F8VZ95 297 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 PPEF1O14829 653 aaPredicted RBP18.55■□□□□ 0.56
VPS53-215ENST00000573028 CFBP00751 764 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 SLITRK6Q9H5Y7 841 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 DBNDD1Q9H9R9 158 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 ERVK-5Q9HDB9 667 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 PNMA2Q9UL42 364 aa18.55■□□□□ 0.56
VPS53-215ENST00000573028 DR1Q01658 176 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 AP3B2Q13367 1082 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 BIRC3Q13489 604 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 APOBEC3HQ6NTF7 200 aaKnown RBP18.54■□□□□ 0.56
VPS53-215ENST00000573028 CHADLQ6NUI6 762 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 DYDC2Q96IM9 177 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 JPH2Q9BR39 696 aaPredicted RBP18.54■□□□□ 0.56
VPS53-215ENST00000573028 STXBP5LQ9Y2K9 1186 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 MYO3BQ8WXR4 1341 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 ZNF746Q6NUN9 644 aaPredicted RBP18.54■□□□□ 0.56
VPS53-215ENST00000573028 SYCP3Q8IZU3 236 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.54■□□□□ 0.561e-7■■■■□ 26.6
VPS53-215ENST00000573028 HES6Q96HZ4 224 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 COA1Q9GZY4 146 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 CD248Q9HCU0 757 aa18.54■□□□□ 0.56
VPS53-215ENST00000573028 CAND2O75155 1236 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 FSBPO95073 299 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 SHBGP04278 402 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 FMO5P49326 533 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 SPRED3Q2MJR0 410 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 DCAF12L1Q5VU92 463 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 HS2ST1Q7LGA3 356 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 SLFN11Q7Z7L1 901 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 RFFLQ8WZ73 363 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 CCDC113Q9H0I3 377 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 ZBTB48P10074 688 aaPredicted RBP18.53■□□□□ 0.56
VPS53-215ENST00000573028 CCDC17Q96LX7 622 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 FAM114A2Q9NRY5 505 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 PKD2L1Q9P0L9 805 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 ZNF219Q9P2Y4 722 aaPredicted RBP18.53■□□□□ 0.56
VPS53-215ENST00000573028 DAAM1Q9Y4D1 1078 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 NRAPQ86VF7 1730 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 TRAPPC3O43617 180 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 EYA4O95677 639 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 LMNB1P20700 586 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 TBC1D10BQ4KMP7 808 aaPredicted RBP18.53■□□□□ 0.56
VPS53-215ENST00000573028 FAM178BQ8IXR5 827 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 HOOK2Q96ED9 719 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 FRMD4BQ9Y2L6 1034 aa18.53■□□□□ 0.56
VPS53-215ENST00000573028 COL24A1Q17RW2 1714 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 GOLGA6L10A0A0M3HER8 536 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 EXOC3O60645 756 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 NDUFB10O96000 172 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 SLCO1A2P46721 670 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 EMC10Q5UCC4 262 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 RASGEF1CQ8N431 466 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 CERKQ8TCT0 537 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 SEC16BQ96JE7 1060 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 FAM20AQ96MK3 541 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 PSMD1Q99460 953 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 PCIF1Q9H4Z3 704 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 CTTNBP2NLQ9P2B4 639 aa18.52■□□□□ 0.56
VPS53-215ENST00000573028 SLC16A3O15427 465 aaKnown RBP18.52■□□□□ 0.55
VPS53-215ENST00000573028 CRKP46108 304 aa18.52■□□□□ 0.55
VPS53-215ENST00000573028 CDR1P51861 262 aa18.52■□□□□ 0.55
VPS53-215ENST00000573028 IRX3P78415 501 aaPredicted RBP18.52■□□□□ 0.55
VPS53-215ENST00000573028 ODR4Q5SWX8 454 aa18.52■□□□□ 0.55
VPS53-215ENST00000573028 CACNA2D3Q8IZS8 1091 aa18.52■□□□□ 0.55
VPS53-215ENST00000573028 MBOAT7Q96N66 472 aa18.52■□□□□ 0.55
VPS53-215ENST00000573028 VAV3Q9UKW4 847 aa18.52■□□□□ 0.55
VPS53-215ENST00000573028 DDX39AO00148 427 aaKnown RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 CTNND1O60716 968 aaKnown RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 ACTN3Q08043 901 aaPredicted RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 DDR1Q08345 913 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 LRCH2Q5VUJ6 765 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 DHX37Q8IY37 1157 aaKnown RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 SLC20A1Q8WUM9 679 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 DCAF4Q8WV16 495 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 ALG3Q92685 438 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 STK33Q9BYT3 514 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 INTS2Q9H0H0 1204 aaKnown RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 RAB17Q9H0T7 212 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 PARVGQ9HBI0 331 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 ARFGEF1Q9Y6D6 1849 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 NHSQ6T4R5 1651 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 SREBF1P36956 1147 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 SYDE2Q5VT97 1194 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 VCPKMTQ9H867 229 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 FOXN3O00409 490 aaPredicted RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 CLSTN1O94985 981 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 MARCKSL1P49006 195 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 MYL7Q01449 175 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 Q4G0T1 1027 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 C1orf131Q8NDD1 294 aaKnown RBP18.51■□□□□ 0.55
VPS53-215ENST00000573028 FBXO25Q8TCJ0 367 aa18.51■□□□□ 0.55
VPS53-215ENST00000573028 C18orf8Q96DM3 657 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms