RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SLFN12Q8IYM2 578 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 METTL13Q8N6R0 699 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 PPM1EQ8WY54 764 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 FAM20AQ96MK3 541 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 MAP7D2Q96T17 732 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 RAD9AQ99638 391 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 FTHL17Q9BXU8 183 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 RTN4Q9NQC3 1192 aaKnown RBP9.11□□□□□ -0.95
VPS53-214ENST00000572607 GINS2Q9Y248 185 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 KIF3AQ9Y496 699 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 BRWD1Q9NSI6 2320 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 TET1Q8NFU7 2136 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 DOCK5Q9H7D0 1870 aa9.11□□□□□ -0.95
VPS53-214ENST00000572607 SLC37A4O43826 429 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 ATP4AP20648 1035 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 IGFBP4P22692 258 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 MCM2P49736 904 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 TBC1D8BQ0IIM8 1120 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 PAK2Q13177 524 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 NR5A1Q13285 461 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 LPIN1Q14693 890 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 XKR3Q5GH77 459 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 FBXO47Q5MNV8 452 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS53-214ENST00000572607 FAM43BQ6ZT52 329 aaPredicted RBP9.1□□□□□ -0.95
VPS53-214ENST00000572607 ETNPPLQ8TBG4 499 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 ARNTL2Q8WYA1 636 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 GJA10Q969M2 543 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 ZBTB10Q96DT7 871 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 UHRF1Q96T88 793 aaPredicted RBP9.1□□□□□ -0.95
VPS53-214ENST00000572607 YME1L1Q96TA2 773 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 CELF4Q9BZC1 486 aaKnown RBP9.1□□□□□ -0.95
VPS53-214ENST00000572607 INSL6Q9Y581 213 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 SQORQ9Y6N5 450 aa9.1□□□□□ -0.95
VPS53-214ENST00000572607 KDM3AQ9Y4C1 1321 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 BTBD18B2RXH4 712 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 EDIL3O43854 480 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 RPS6KA5O75582 802 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 UPP2O95045 317 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 C22orf31O95567 290 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 CD52P31358 61 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 GGCXP38435 758 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 PSMC5P62195 406 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 MRPS5P82675 430 aaKnown RBP9.09□□□□□ -0.95
VPS53-214ENST00000572607 GUCY1B3Q02153 619 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 TFF2Q03403 129 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 ST3GAL1Q11201 340 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 PPP2R5CQ13362 524 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 CCDC85BQ15834 202 aaPredicted RBP9.09□□□□□ -0.95
VPS53-214ENST00000572607 CALCRLQ16602 461 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 TCTN1Q2MV58 587 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 NCAPH2Q6IBW4 605 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 TMCO2Q7Z6W1 182 aaPredicted RBP9.09□□□□□ -0.95
VPS53-214ENST00000572607 SCLT1Q96NL6 688 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 KIF2CQ99661 725 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 JPH2Q9BR39 696 aaPredicted RBP9.09□□□□□ -0.95
VPS53-214ENST00000572607 TMUB1Q9BVT8 246 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 CERS4Q9HA82 394 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 KCNMB3Q9NPA1 279 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 C11orf16Q9NQ32 467 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 AKT3Q9Y243 479 aa9.09□□□□□ -0.95
VPS53-214ENST00000572607 DDX11L8A8MPP1 907 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 ZBTB42B2RXF5 422 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 GPR182O15218 404 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 ZNF862O60290 1169 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 NEMFO60524 1076 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 ARHGEF15O94989 841 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 STAG3L1P0CL83 205 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 ATP2B1P20020 1258 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 QARSP47897 775 aaKnown RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 DNM2P50570 870 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 CLCN3P51790 818 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 CRYBB1P53674 252 aaPredicted RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 COPS2P61201 443 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 CDC42EP1Q00587 391 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 TAP1Q03518 808 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 NFX1Q12986 1120 aaKnown RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 EPHA7Q15375 998 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 UGCGQ16739 394 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 MTERF2Q49AM1 385 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 EARS2Q5JPH6 523 aaKnown RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 EFCAB12Q6NXP0 572 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 B3GNT9Q6UX72 402 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 EXOC8Q8IYI6 725 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 KIAA0319LQ8IZA0 1049 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 BANK1Q8NDB2 785 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 TNFRSF25Q93038 417 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 TOP1MTQ969P6 601 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 CCDC43Q96MW1 224 aaKnown RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 SAMD11Q96NU1 681 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 TGS1Q96RS0 853 aaKnown RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 SUGCTQ9HAC7 445 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 VAV3Q9UKW4 847 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 PADI3Q9ULW8 664 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 NOL7Q9UMY1 257 aaKnown RBP9.08□□□□□ -0.96
VPS53-214ENST00000572607 PCDHA12Q9UN75 941 aa9.08□□□□□ -0.96
VPS53-214ENST00000572607 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 DENND3A2RUS2 1198 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 LCHNA4D1U4 455 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 LINC01553A4QN01 128 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms