RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 C10orf76Q5T2E6 689 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 NAP1L3Q99457 506 aaPredicted RBP15.68■□□□□ 0.1
VPS35-210ENST00000568784 PLCD4Q9BRC7 762 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 CCDC169A6NNP5 214 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 EEF2P13639 858 aaKnown RBP15.68■□□□□ 0.1
VPS35-210ENST00000568784 SCTRP47872 440 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 CHADLQ6NUI6 762 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 LRIG3Q6UXM1 1119 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 FRMD5Q7Z6J6 570 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 FBXO11Q86XK2 927 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 PPM1KQ8N3J5 372 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 UBL4BQ8N7F7 174 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 EPS8L3Q8TE67 593 aaKnown RBP15.68■□□□□ 0.1
VPS35-210ENST00000568784 ZKSCAN4Q969J2 545 aaPredicted RBP15.68■□□□□ 0.1
VPS35-210ENST00000568784 CCDC127Q96BQ5 260 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 ARHGEF26Q96DR7 871 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 OSBPL7Q9BZF2 842 aa15.68■□□□□ 0.1
VPS35-210ENST00000568784 RBAK-RBAKDNI3L0D1 243 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 TRAPPC3O43617 180 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 LMNB1P20700 586 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 MYL7Q01449 175 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 PPP4R3CPQ6ZMV5 832 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 ACTRT1Q8TDG2 376 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 SCFD2Q8WU76 684 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 BTBD6Q96KE9 485 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 ACTR5Q9H9F9 607 aaPredicted RBP15.67■□□□□ 0.1
VPS35-210ENST00000568784 TYW1Q9NV66 732 aaKnown RBP15.67■□□□□ 0.1
VPS35-210ENST00000568784 hCG_1984214I3L0E3 225 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 CETN1Q12798 172 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 NFIAQ12857 509 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 EDRF1Q3B7T1 1238 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 SPATA31A1Q5TZJ5 1347 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 NT5DC3Q86UY8 548 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 MREGQ8N565 214 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 ZNF713Q8N859 430 aaPredicted RBP15.67■□□□□ 0.1
VPS35-210ENST00000568784 SEMA4AQ9H3S1 761 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 SLITRK6Q9H5Y7 841 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 SMTNP53814 917 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 RHBDL3P58872 404 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 ICA1Q05084 483 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 LRRC34Q8IZ02 419 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 RFFLQ8WZ73 363 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 COL4A1P02462 1669 aa15.67■□□□□ 0.1
VPS35-210ENST00000568784 GOLGA8IPA6NC78 632 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 GOLGA8JA6NMD2 632 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 FTLP02792 175 aaPredicted RBP15.66■□□□□ 0.1
VPS35-210ENST00000568784 SOX5P35711 763 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 GCLMP48507 274 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ORC2Q13416 577 aaPredicted RBP15.66■□□□□ 0.1
VPS35-210ENST00000568784 CERKLQ49MI3 558 aaPredicted RBP15.66■□□□□ 0.1
VPS35-210ENST00000568784 GRIPAP1Q4V328 841 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 AMIGO3Q86WK7 504 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 JAMLQ86YT9 394 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 CCDC50Q8IVM0 306 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ZNF622Q969S3 477 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS35-210ENST00000568784 SLC35C1Q96A29 364 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ADAM33Q9BZ11 813 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 RASGRF2O14827 1237 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ATP2B4P23634 1241 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 DYDC2Q96IM9 177 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 NSRP1Q9H0G5 558 aaKnown RBP15.66■□□□□ 0.1
VPS35-210ENST00000568784 VEZTQ9HBM0 779 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ERVK-5Q9HDB9 667 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 UBR2Q8IWV8 1755 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 MARCKSL1P49006 195 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 MYO1EQ12965 1108 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ANKRD20A8PQ5CZ79 823 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 PALB2Q86YC2 1186 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 CD302Q8IX05 232 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 KIF2BQ8N4N8 673 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 TBC1D22AQ8WUA7 517 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 AMNQ9BXJ7 453 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 ACP6Q9NPH0 428 aa15.66■□□□□ 0.1
VPS35-210ENST00000568784 GAS7O60861 476 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 TRIM37O94972 964 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 FNTAP49354 379 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 LONRF1Q17RB8 773 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 KIAA1755Q5JYT7 1200 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 LRCH2Q5VUJ6 765 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 NUGGCQ68CJ6 796 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 SLC20A1Q8WUM9 679 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 CALR3Q96L12 384 aaKnown RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 FAM118BQ9BPY3 351 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 EIF2AK1Q9BQI3 630 aaKnown RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 ERP44Q9BS26 406 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 TPX2Q9ULW0 747 aaKnown RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 IGSF9BQ9UPX0 1349 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 PDXKO00764 312 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 COBLL1Q53SF7 1204 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 FUKQ8N0W3 1084 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 SUCLA2Q9P2R7 463 aaPredicted RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 MTUS1Q9ULD2 1270 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 ALG6Q9Y672 507 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 ARHGEF35A5YM69 484 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 FOXO6A8MYZ6 492 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 LNX1Q8TBB1 728 aaPredicted RBP15.65■□□□□ 0.1
VPS35-210ENST00000568784 C1orf54Q8WWF1 131 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 SGSM3Q96HU1 749 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 DBNDD1Q9H9R9 158 aa15.65■□□□□ 0.1
VPS35-210ENST00000568784 GEMIN8Q9NWZ8 242 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms