RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 LRCH2Q5VUJ6 765 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 ZNF710Q8N1W2 664 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 MICAL1Q8TDZ2 1067 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 TEKT3Q9BXF9 490 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 UNC45AQ9H3U1 944 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 RNF19AQ9NV58 838 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 LZTS1Q9Y250 596 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 FSD2A1L4K1 749 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 PER2O15055 1255 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 HOXA2O43364 376 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 ZSCAN20P17040 1043 aaPredicted RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 JAK3P52333 1124 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 RBM10P98175 930 aaKnown RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 PLCB3Q01970 1234 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 TOB2Q14106 344 aaPredicted RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 PDE12Q6L8Q7 609 aaKnown RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 LRRC55Q6ZSA7 311 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 RUFY3Q7L099 469 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 LRRC43Q8N309 656 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 VN1R2Q8NFZ6 395 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 TBCKQ8TEA7 893 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 GJA10Q969M2 543 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 ZNF668Q96K58 619 aaPredicted RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 CASD1Q96PB1 797 aa16.84■□□□□ 0.29
CLN3-236ENST00000568558 CDCA3Q99618 268 aaPredicted RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 USP15Q9Y4E8 981 aaPredicted RBP16.84■□□□□ 0.29
CLN3-236ENST00000568558 LOC730098B7Z3J9 87 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 PSMD10O75832 226 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 DARSP14868 501 aaKnown RBP16.83■□□□□ 0.28
CLN3-236ENST00000568558 TBC1D8BQ0IIM8 1120 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 TARBP2Q15633 366 aaKnown RBP16.83■□□□□ 0.28
CLN3-236ENST00000568558 Q4G0T1 1027 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 ARID2Q68CP9 1835 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 HFE2Q6ZVN8 426 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 ECHDC2Q86YB7 292 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 TRIM22Q8IYM9 498 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 RDM1Q8NG50 284 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 MRPS27Q92552 414 aaKnown RBP16.83■□□□□ 0.28
CLN3-236ENST00000568558 C22orf23Q9BZE7 217 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 PCDHA4Q9UN74 947 aa16.83■□□□□ 0.28
CLN3-236ENST00000568558 KMT2EQ8IZD2 1858 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 TDP2O95551 362 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 SSRP1Q08945 709 aaKnown RBP16.82■□□□□ 0.28
CLN3-236ENST00000568558 KCNC3Q14003 757 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 CBX2Q14781 532 aaPredicted RBP16.82■□□□□ 0.28
CLN3-236ENST00000568558 CLLU1OSQ5K130 101 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 PLPP4Q5VZY2 271 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 KCNT2Q6UVM3 1135 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 B3GNT9Q6UX72 402 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 MIER3Q7Z3K6 550 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 ABI1Q8IZP0 508 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 ZNF558Q96NG5 402 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 SCLT1Q96NL6 688 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 ZSWIM6Q9HCJ5 1215 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 SEPT9Q9UHD8 586 aaPredicted RBP16.82■□□□□ 0.28
CLN3-236ENST00000568558 PUF60Q9UHX1 559 aaKnown RBP16.82■□□□□ 0.28
CLN3-236ENST00000568558 WDFY4Q6ZS81 3184 aa16.82■□□□□ 0.28
CLN3-236ENST00000568558 PIEZO1Q92508 2521 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 CYP3A7-CYP3A51PA0A087WV96 503 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 A0A0U1RQF3 1178 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 M0R2N6 131 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 EPB41L2O43491 1005 aaKnown RBP16.81■□□□□ 0.28
CLN3-236ENST00000568558 DEXIO95424 95 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 FGFR4P22455 802 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 CYP3A7P24462 503 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 PPM1AP35813 382 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 PBX3P40426 434 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 DRP2Q13474 957 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 TMEM184AQ6ZMB5 413 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 ZNF598Q86UK7 904 aaKnown RBP16.81■□□□□ 0.28
CLN3-236ENST00000568558 DAGLBQ8NCG7 672 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 NLRP7Q8WX94 980 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 SUSD6Q92537 303 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 EDAQ92838 391 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 MBOAT7Q96N66 472 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 CEP89Q96ST8 783 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 TCF25Q9BQ70 676 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 PHF7Q9BWX1 381 aaPredicted RBP16.81■□□□□ 0.28
CLN3-236ENST00000568558 NIFKQ9BYG3 293 aaKnown RBP16.81■□□□□ 0.28
CLN3-236ENST00000568558 KCNH6Q9H252 994 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 ENTPD7Q9NQZ7 604 aa16.81■□□□□ 0.28
CLN3-236ENST00000568558 IGKV6-21A0A0C4DH24 114 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 HIDE1A8MVS5 230 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 STBD1O95210 358 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 SRGAP2BP0DMP2 458 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 ATF7P17544 494 aaPredicted RBP16.8■□□□□ 0.28
CLN3-236ENST00000568558 NPY5RQ15761 445 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 MTERF2Q49AM1 385 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 XKR3Q5GH77 459 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 MOXD1Q6UVY6 613 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 BLIDQ8IZY5 108 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 RNF169Q8NCN4 708 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 ETNPPLQ8TBG4 499 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 ZNF274Q96GC6 653 aaPredicted RBP16.8■□□□□ 0.28
CLN3-236ENST00000568558 NGRNQ9NPE2 291 aaKnown RBP16.8■□□□□ 0.28
CLN3-236ENST00000568558 DACT1Q9NYF0 836 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 CYP46A1Q9Y6A2 500 aa16.8■□□□□ 0.28
CLN3-236ENST00000568558 TMEM150BA6NC51 233 aa16.79■□□□□ 0.28
CLN3-236ENST00000568558 CPLX1O14810 134 aa16.79■□□□□ 0.28
CLN3-236ENST00000568558 EOMESO95936 686 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms