RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ETNPPLQ8TBG4 499 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 ZNF668Q96K58 619 aaPredicted RBP18.11■□□□□ 0.49
CLN3-229ENST00000567963 CWH43Q9H720 699 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 HCSTQ9UBK5 93 aa18.11■□□□□ 0.49
CLN3-229ENST00000567963 FAM86C2PA6NEL3 165 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 STBD1O95210 358 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 ALADP13716 330 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 SCRN1Q12765 414 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 XKR3Q5GH77 459 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 EFHBQ8N7U6 833 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 COLGALT1Q8NBJ5 622 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 MSLNLQ96KJ4 702 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 CEP89Q96ST8 783 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 KCNJ14Q9UNX9 436 aa18.1■□□□□ 0.49
CLN3-229ENST00000567963 FGF18O76093 207 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 DARSP14868 501 aaKnown RBP18.09■□□□□ 0.49
CLN3-229ENST00000567963 NRIP1P48552 1158 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 NDUFV1P49821 464 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 SMAD4Q13485 552 aaKnown RBP18.09■□□□□ 0.49
CLN3-229ENST00000567963 CSPP1Q1MSJ5 1256 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 INF2Q27J81 1249 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 KRT25Q7Z3Z0 450 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 RBM23Q86U06 439 aaKnown RBP18.09■□□□□ 0.49
CLN3-229ENST00000567963 MICAL1Q8TDZ2 1067 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 CASD1Q96PB1 797 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 PHF20Q9BVI0 1012 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 TMEM117Q9H0C3 514 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 CLEC1BQ9P126 229 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 SEPT9Q9UHD8 586 aaPredicted RBP18.09■□□□□ 0.49
CLN3-229ENST00000567963 DDX25Q9UHL0 483 aaKnown RBP18.09■□□□□ 0.49
CLN3-229ENST00000567963 CD207Q9UJ71 328 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 PCDHGC5Q9Y5F6 944 aa18.09■□□□□ 0.49
CLN3-229ENST00000567963 IGKV6-21A0A0C4DH24 114 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 TMEM150BA6NC51 233 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 HOXA2O43364 376 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 CDKL5O76039 1030 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 CDC42EP1Q00587 391 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 DRP2Q13474 957 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 MTERF2Q49AM1 385 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 LRRC55Q6ZSA7 311 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 ECHDC2Q86YB7 292 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 THNSL1Q8IYQ7 743 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 NLRP7Q8WX94 980 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 SH2D3AQ9BRG2 576 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 SLKQ9H2G2 1235 aaPredicted RBP18.08■□□□□ 0.49
CLN3-229ENST00000567963 TLR9Q9NR96 1032 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 RNF19AQ9NV58 838 aa18.08■□□□□ 0.49
CLN3-229ENST00000567963 A0A0U1RQF3 1178 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 SLC37A4O43826 429 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 EYA4O95677 639 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 LAG3P18627 525 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 FGFR4P22455 802 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 ERVFC1P60507 584 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 LETM2Q2VYF4 491 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 SCLT1Q96NL6 688 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 TLE6Q9H808 572 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 TPCN1Q9ULQ1 816 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 STK36Q9NRP7 1315 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 CCDC194A0A1B0GVG4 234 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 DDX11L8A8MPP1 907 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 PRR33A8MZF0 331 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 DCXO43602 365 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 PFKFB2O60825 505 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 CSDE1O75534 798 aaKnown RBP18.07■□□□□ 0.48
CLN3-229ENST00000567963 GLP2RO95838 553 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 EOMESO95936 686 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 XBP1P17861 261 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 DNM2P50570 870 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 PLCB3Q01970 1234 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 COASYQ13057 564 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 PPP4R3AQ6IN85 833 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 PDE12Q6L8Q7 609 aaKnown RBP18.07■□□□□ 0.48
CLN3-229ENST00000567963 SMRP1Q8NCR6 262 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 GCOM2Q9BZD3 368 aaPredicted RBP18.07■□□□□ 0.48
CLN3-229ENST00000567963 LZTS1Q9Y250 596 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 HCN4Q9Y3Q4 1203 aa18.07■□□□□ 0.48
CLN3-229ENST00000567963 ARIH1Q9Y4X5 557 aaPredicted RBP18.07■□□□□ 0.48
CLN3-229ENST00000567963 EML1O00423 815 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 FSCN2O14926 492 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 PER2O15055 1255 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 MAFO75444 373 aaPredicted RBP18.06■□□□□ 0.48
CLN3-229ENST00000567963 NEFLP07196 543 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 PLA2G5P39877 138 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 PSMC5P62195 406 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 PPP2R5CQ13362 524 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 KCNT2Q6UVM3 1135 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 ANO5Q75V66 913 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 NEK8Q86SG6 692 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 ZNF598Q86UK7 904 aaKnown RBP18.06■□□□□ 0.48
CLN3-229ENST00000567963 ABI1Q8IZP0 508 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 MRPS27Q92552 414 aaKnown RBP18.06■□□□□ 0.48
CLN3-229ENST00000567963 FAM20AQ96MK3 541 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 POP1Q99575 1024 aaKnown RBP18.06■□□□□ 0.48
CLN3-229ENST00000567963 KCNMB3Q9NPA1 279 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 CHST12Q9NRB3 414 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 GJB4Q9NTQ9 266 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 DACT1Q9NYF0 836 aa18.06■□□□□ 0.48
CLN3-229ENST00000567963 TRIOO75962 3097 aa18.05■□□□□ 0.48
CLN3-229ENST00000567963 A0A087WZ62 844 aa18.05■□□□□ 0.48
CLN3-229ENST00000567963 CLLU1OSQ5K130 101 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms