RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CD320Q9NPF0 282 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 CHST12Q9NRB3 414 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 DDX25Q9UHL0 483 aaKnown RBP16.78■□□□□ 0.28
CLN3-222ENST00000566083 CD207Q9UJ71 328 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 LZTS1Q9Y250 596 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 STK36Q9NRP7 1315 aa16.77■□□□□ 0.28
CLN3-222ENST00000566083 EDIL3O43854 480 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 EOMESO95936 686 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 DARSP14868 501 aaKnown RBP16.77■□□□□ 0.27
CLN3-222ENST00000566083 IBSPP21815 317 aaPredicted RBP16.77■□□□□ 0.27
CLN3-222ENST00000566083 PPM1AP35813 382 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 NDUFV1P49821 464 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 GPC3P51654 580 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 ZP2Q05996 745 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 STK3Q13188 491 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 TARBP2Q15633 366 aaKnown RBP16.77■□□□□ 0.27
CLN3-222ENST00000566083 FAM102BQ5T8I3 360 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 THNSL1Q8IYQ7 743 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 LRRC71Q8N4P6 559 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 PPP1R16BQ96T49 567 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 GCOM2Q9BZD3 368 aaPredicted RBP16.77■□□□□ 0.27
CLN3-222ENST00000566083 TLR9Q9NR96 1032 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 PPME1Q9Y570 386 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 WDR81Q562E7 1941 aa16.77■□□□□ 0.27
CLN3-222ENST00000566083 FGF18O76093 207 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 TDP2O95551 362 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 SRGAP2BP0DMP2 458 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 SKIP12755 728 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 GATMP50440 423 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 PSMC5P62195 406 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 ERICH6BQ5W0A0 696 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 PPP4R3AQ6IN85 833 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 B3GNT9Q6UX72 402 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 LRRC43Q8N309 656 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 ETNPPLQ8TBG4 499 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 NLRP7Q8WX94 980 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 TLE6Q9H808 572 aa16.76■□□□□ 0.27
CLN3-222ENST00000566083 TYW1Q9NV66 732 aaKnown RBP16.76■□□□□ 0.27
CLN3-222ENST00000566083 SEPT9Q9UHD8 586 aaPredicted RBP16.76■□□□□ 0.27
CLN3-222ENST00000566083 FNDC1Q4ZHG4 1894 aaPredicted RBP16.75■□□□□ 0.27
CLN3-222ENST00000566083 A0A0U1RQF3 1178 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 C19orf67A6NJJ6 358 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 PRR33A8MZF0 331 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 TBX3O15119 743 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 MBTPS2O43462 519 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 EYA4O95677 639 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 SFPQP23246 707 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLN3-222ENST00000566083 DNAJB1P25685 340 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 PLCB3Q01970 1234 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 KRT17Q04695 432 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 UGCGQ16739 394 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 INF2Q27J81 1249 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 NEK8Q86SG6 692 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 ZNF410Q86VK4 478 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 COLGALT1Q8NBJ5 622 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 PHF20Q9BVI0 1012 aa16.75■□□□□ 0.27
CLN3-222ENST00000566083 MRPL9Q9BYD2 267 aaKnown RBP16.75■□□□□ 0.27
CLN3-222ENST00000566083 IGKV6-21A0A0C4DH24 114 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 DCXO43602 365 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 PFKFB2O60825 505 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 NRIP1P48552 1158 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 COASYQ13057 564 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 PPP2R5CQ13362 524 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 BMS1Q14692 1282 aaKnown RBP16.74■□□□□ 0.27
CLN3-222ENST00000566083 NPY5RQ15761 445 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 LETM2Q2VYF4 491 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 MTERF2Q49AM1 385 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 ECHDC2Q86YB7 292 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 TRAIPQ9BWF2 469 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 BRMS1Q9HCU9 246 aa16.74■□□□□ 0.27
CLN3-222ENST00000566083 NGRNQ9NPE2 291 aaKnown RBP16.74■□□□□ 0.27
CLN3-222ENST00000566083 DDX11L8A8MPP1 907 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 MARCH6O60337 910 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 TBX10O75333 385 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 MAFO75444 373 aaPredicted RBP16.73■□□□□ 0.27
CLN3-222ENST00000566083 FGFR1P11362 822 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 IRS1P35568 1242 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 QARSP47897 775 aaKnown RBP16.73■□□□□ 0.27
CLN3-222ENST00000566083 DLX2Q07687 328 aaPredicted RBP16.73■□□□□ 0.27
CLN3-222ENST00000566083 SCRN1Q12765 414 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 SMRP1Q8NCR6 262 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 MRPS27Q92552 414 aaKnown RBP16.73■□□□□ 0.27
CLN3-222ENST00000566083 FAM122AQ96E09 287 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 MSLNLQ96KJ4 702 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 ZNF558Q96NG5 402 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 CASD1Q96PB1 797 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 CWH43Q9H720 699 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 RAPGEFL1Q9UHV5 662 aa16.73■□□□□ 0.27
CLN3-222ENST00000566083 CSPG5O95196 566 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 BAG4O95429 457 aaKnown RBP16.72■□□□□ 0.27
CLN3-222ENST00000566083 P4HBP07237 508 aaKnown RBP16.72■□□□□ 0.27
CLN3-222ENST00000566083 GTF2F1P35269 517 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-222ENST00000566083 PLA2G5P39877 138 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 KCNT2Q6UVM3 1135 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 SLFN12Q8IYM2 578 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 SLC7A3Q8WY07 619 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 KHSRPQ92945 711 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-222ENST00000566083 GJA10Q969M2 543 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 AIFM3Q96NN9 605 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 LARP6Q9BRS8 491 aaKnown RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms