RNA–Protein interactions for RNA: ENST00000566016.5

SHCBP1-205, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 1 (best)

Gene SHCBP1, Length 1,482 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-205ENST00000566016 GINS2Q9Y248 185 aa23.44■■□□□ 1.34
SHCBP1-205ENST00000566016 TTC3P53804 2025 aa23.44■■□□□ 1.34
SHCBP1-205ENST00000566016 SPTLC2O15270 562 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 EYA4O95677 639 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 GRB10Q13322 594 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 MXD4Q14582 209 aaPredicted RBP23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 TCTN1Q2MV58 587 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 TMEM119Q4V9L6 283 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 CDK5RAP3Q96JB5 506 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 SLC9A7Q96T83 725 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 OSMRQ99650 979 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 CSRNP2Q9H175 543 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 CDHR5Q9HBB8 845 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 TFIP11Q9UBB9 837 aaKnown RBP23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 COL4A3BPQ9Y5P4 624 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 SLC4A7Q9Y6M7 1214 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 MYH11P35749 1972 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 SZT2Q5T011 3432 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 ASAP2O43150 1006 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 USO1O60763 962 aaKnown RBP23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 EIF4BP23588 611 aaKnown RBP23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 WDR5P61964 334 aaKnown RBP23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 NUCB2P80303 420 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 PAK2Q13177 524 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 PADI6Q6TGC4 694 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 RHPN2Q8IUC4 686 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 PHOSPHO2Q8TCD6 241 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 KCNG4Q8TDN1 519 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 TMEM143Q96AN5 459 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 CALML4Q96GE6 196 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 PNMA5Q96PV4 448 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 FTHL17Q9BXU8 183 aa23.43■■□□□ 1.34
SHCBP1-205ENST00000566016 A0A087WWV3 80 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 ZBBXA8MT70 800 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 DARSP14868 501 aaKnown RBP23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 CYP11B2P19099 503 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 CD52P31358 61 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 KCNJ6P48051 423 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 SMAD3P84022 425 aaKnown RBP23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 PRPF31Q8WWY3 499 aaKnown RBP23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 NLRP7Q8WX94 980 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 SCLT1Q96NL6 688 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 BMP2KQ9NSY1 1161 aaPredicted RBP23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 PADI3Q9ULW8 664 aa23.42■■□□□ 1.34
SHCBP1-205ENST00000566016 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 GPR182O15218 404 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 RPS6KA5O75582 802 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 ARL2P36404 184 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 DNM1Q05193 864 aaKnown RBP23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 LAMTOR4Q0VGL1 99 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 KCNK18Q7Z418 384 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 PPP1R16BQ96T49 567 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 GCOM2Q9BZD3 368 aaPredicted RBP23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 ERVK-5Q9HDB9 667 aa23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 NOC2LQ9Y3T9 749 aaKnown RBP23.41■■□□□ 1.34
SHCBP1-205ENST00000566016 E9PMD0 336 aa23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 TXLNAP40222 546 aa23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 POU5F1BQ06416 359 aa23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 FAM228AQ86W67 206 aa23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 CLIC6Q96NY7 704 aa23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 INO80BQ9C086 356 aaPredicted RBP23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 KCND2Q9NZV8 630 aa23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 DAXXQ9UER7 740 aaPredicted RBP23.4■■□□□ 1.34
SHCBP1-205ENST00000566016 A0A087WZ62 844 aa23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 ATP2A2P16615 1042 aaKnown RBP23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 KRT85P78386 507 aa23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 ZRSR1Q15695 479 aaKnown RBP23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 FOXD4L6Q3SYB3 417 aaPredicted RBP23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 FOXD4L3Q6VB84 417 aaPredicted RBP23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 SYMPKQ92797 1274 aaKnown RBP23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 EPSTI1Q96J88 318 aa23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 NLRP4Q96MN2 994 aa23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 FDXACB1Q9BRP7 624 aaPredicted RBP23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 IFT122Q9HBG6 1241 aa23.39■■□□□ 1.34
SHCBP1-205ENST00000566016 CHD9Q3L8U1 2897 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 TFDP1Q14186 410 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 KARSQ15046 597 aaKnown RBP23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 GPR153Q6NV75 609 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 USP49Q70CQ1 688 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 IFNLR1Q8IU57 520 aaPredicted RBP23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 KSR1Q8IVT5 923 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 SYT2Q8N9I0 419 aaPredicted RBP23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 TIPINQ9BVW5 301 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 NFKBIZQ9BYH8 718 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 POLR3FQ9H1D9 316 aaPredicted RBP23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 RCOR1Q9UKL0 485 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 ST3GAL5Q9UNP4 418 aa23.38■■□□□ 1.33
SHCBP1-205ENST00000566016 CUTAO60888 179 aa23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 AMHP03971 560 aa23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 PLCG1P19174 1290 aa23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 FXR1P51114 621 aaKnown RBP eCLIP23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 FAM109BQ6ICB4 259 aaPredicted RBP23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 SRGAP1Q7Z6B7 1085 aa23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 RASSF8Q8NHQ8 419 aa23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 TSPYL2Q9H2G4 693 aaPredicted RBP23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 CCDC39Q9UFE4 941 aa23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 CIZ1Q9ULV3 898 aaPredicted RBP23.37■■□□□ 1.33
SHCBP1-205ENST00000566016 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.36■■□□□ 1.33
SHCBP1-205ENST00000566016 SOX1O00570 391 aaPredicted RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms