RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PDIA3P30101 505 aaKnown RBP19.04■□□□□ 0.64
CLN3-211ENST00000564091 PLCB3Q01970 1234 aa19.04■□□□□ 0.64
CLN3-211ENST00000564091 ECHDC2Q86YB7 292 aa19.04■□□□□ 0.64
CLN3-211ENST00000564091 MRPS27Q92552 414 aaKnown RBP19.04■□□□□ 0.64
CLN3-211ENST00000564091 MFSD14AQ96MC6 490 aa19.04■□□□□ 0.64
CLN3-211ENST00000564091 TCF25Q9BQ70 676 aa19.04■□□□□ 0.64
CLN3-211ENST00000564091 PHF7Q9BWX1 381 aaPredicted RBP19.04■□□□□ 0.64
CLN3-211ENST00000564091 AGXT2Q9BYV1 514 aa19.04■□□□□ 0.64
CLN3-211ENST00000564091 PUF60Q9UHX1 559 aaKnown RBP19.04■□□□□ 0.64
CLN3-211ENST00000564091 HIDE1A8MVS5 230 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 HOXA2O43364 376 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 CSDE1O75534 798 aaKnown RBP19.03■□□□□ 0.64
CLN3-211ENST00000564091 GPC3P51654 580 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 USP11P51784 963 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 NLRP5P59047 1200 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 NHLH1Q02575 133 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 DRP2Q13474 957 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 CBX2Q14781 532 aaPredicted RBP19.03■□□□□ 0.64
CLN3-211ENST00000564091 LRCH2Q5VUJ6 765 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 PDE12Q6L8Q7 609 aaKnown RBP19.03■□□□□ 0.64
CLN3-211ENST00000564091 KCNT2Q6UVM3 1135 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 ABI1Q8IZP0 508 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 SLC5A5Q92911 643 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 ZNF558Q96NG5 402 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 SCLT1Q96NL6 688 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 RIT2Q99578 217 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 CDCA3Q99618 268 aaPredicted RBP19.03■□□□□ 0.64
CLN3-211ENST00000564091 APOL5Q9BWW9 433 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 TEKT3Q9BXF9 490 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 ENTPD7Q9NQZ7 604 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 LZTS1Q9Y250 596 aa19.03■□□□□ 0.64
CLN3-211ENST00000564091 DARSP14868 501 aaKnown RBP19.02■□□□□ 0.64
CLN3-211ENST00000564091 TECP42680 631 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 CLLU1OSQ5K130 101 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 LLGL2Q6P1M3 1020 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 TRIM67Q6ZTA4 783 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 LRRC43Q8N309 656 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 TBCKQ8TEA7 893 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 NLRP7Q8WX94 980 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 SUSD6Q92537 303 aa19.02■□□□□ 0.64
CLN3-211ENST00000564091 TMEM150BA6NC51 233 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 TMEM221A6NGB7 291 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 M0R296 226 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 PSMA5P28066 241 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 SFNP31947 248 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 JAK3P52333 1124 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 ZXDAP98168 799 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 TBC1D8BQ0IIM8 1120 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 KCNC3Q14003 757 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 TARBP2Q15633 366 aaKnown RBP19.01■□□□□ 0.63
CLN3-211ENST00000564091 SYCE2Q6PIF2 218 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 ZNF710Q8N1W2 664 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 SH2D3AQ9BRG2 576 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 LARP6Q9BRS8 491 aaKnown RBP19.01■□□□□ 0.63
CLN3-211ENST00000564091 S1PR5Q9H228 398 aa19.01■□□□□ 0.63
CLN3-211ENST00000564091 A0A0U1RQF3 1178 aa19■□□□□ 0.63
CLN3-211ENST00000564091 PSMD10O75832 226 aa19■□□□□ 0.63
CLN3-211ENST00000564091 TDP2O95551 362 aa19■□□□□ 0.63
CLN3-211ENST00000564091 ATF7P17544 494 aaPredicted RBP19■□□□□ 0.63
CLN3-211ENST00000564091 EVCP57679 992 aa19■□□□□ 0.63
CLN3-211ENST00000564091 KRT17Q04695 432 aa19■□□□□ 0.63
CLN3-211ENST00000564091 MTERF2Q49AM1 385 aa19■□□□□ 0.63
CLN3-211ENST00000564091 ANKRD54Q6NXT1 300 aa19■□□□□ 0.63
CLN3-211ENST00000564091 TMEM184AQ6ZMB5 413 aa19■□□□□ 0.63
CLN3-211ENST00000564091 MIER3Q7Z3K6 550 aa19■□□□□ 0.63
CLN3-211ENST00000564091 TMC7Q7Z402 723 aa19■□□□□ 0.63
CLN3-211ENST00000564091 ZNF598Q86UK7 904 aaKnown RBP19■□□□□ 0.63
CLN3-211ENST00000564091 HELQQ8TDG4 1101 aa19■□□□□ 0.63
CLN3-211ENST00000564091 PBXIP1Q96AQ6 731 aa19■□□□□ 0.63
CLN3-211ENST00000564091 KCNH6Q9H252 994 aa19■□□□□ 0.63
CLN3-211ENST00000564091 NGRNQ9NPE2 291 aaKnown RBP19■□□□□ 0.63
CLN3-211ENST00000564091 SH3GLB2Q9NR46 395 aa19■□□□□ 0.63
CLN3-211ENST00000564091 SPG21Q9NZD8 308 aa19■□□□□ 0.63
CLN3-211ENST00000564091 SEPT9Q9UHD8 586 aaPredicted RBP19■□□□□ 0.63
CLN3-211ENST00000564091 PCDHA4Q9UN74 947 aa19■□□□□ 0.63
CLN3-211ENST00000564091 TECTAO75443 2155 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 FSD2A1L4K1 749 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 STBD1O95210 358 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 SRGAP2BP0DMP2 458 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 PPM1AP35813 382 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 MRE11P49959 708 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 TOB2Q14106 344 aaPredicted RBP18.99■□□□□ 0.63
CLN3-211ENST00000564091 Q4G0T1 1027 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 BMP8AQ7Z5Y6 402 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 CDH22Q9UJ99 828 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 ATG2AQ2TAZ0 1938 aa18.99■□□□□ 0.63
CLN3-211ENST00000564091 NT5C1B-RDH14C9J2C7 533 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 EOMESO95936 686 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 SP100P23497 879 aaPredicted RBP18.98■□□□□ 0.63
CLN3-211ENST00000564091 SSRP1Q08945 709 aaKnown RBP18.98■□□□□ 0.63
CLN3-211ENST00000564091 LONRF3Q496Y0 759 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 XKR3Q5GH77 459 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 IER5LQ5T953 404 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 RUFY3Q7L099 469 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 TRIM22Q8IYM9 498 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 SLC39A11Q8N1S5 342 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 CEP89Q96ST8 783 aa18.98■□□□□ 0.63
CLN3-211ENST00000564091 NIFKQ9BYG3 293 aaKnown RBP18.98■□□□□ 0.63
CLN3-211ENST00000564091 GCOM2Q9BZD3 368 aaPredicted RBP18.98■□□□□ 0.63
CLN3-211ENST00000564091 CYP3A7-CYP3A51PA0A087WV96 503 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms