RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 PBX3P40426 434 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 PARM1Q6UWI2 310 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 SEPT14Q6ZU15 432 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 FAM160B2Q86V87 743 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 CHURC1Q8WUH1 139 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 GAB3Q8WWW8 586 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 ZC3H10Q96K80 434 aaKnown RBP12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 ZBP1Q9H171 429 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 TUT1Q9H6E5 874 aaKnown RBP12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 PRR12Q9ULL5 1215 aa12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 ZFP37Q9Y6Q3 630 aaPredicted RBP12.65□□□□□ -0.38
HDGFL3-204ENST00000563790 TEX51A0A1B0GUA7 166 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 APAF1O14727 1248 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 SLC28A2O43868 658 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 CALML3P27482 149 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 ALDH7A1P49419 539 aaKnown RBP12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 PIP4P1Q86T03 277 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 GMCL1P1Q8NEA9 526 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 SETD4Q9NVD3 440 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 SYNPO2Q9UMS6 1093 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 SSUH2Q9Y2M2 353 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 SQORQ9Y6N5 450 aa12.64□□□□□ -0.39
HDGFL3-204ENST00000563790 EVPLQ92817 2033 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 C2CD2LO14523 706 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 IDH1O75874 414 aaKnown RBP12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 ICAM1P05362 532 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 CLCN4P51793 760 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 GAS6Q14393 721 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 LRRC55Q6ZSA7 311 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 SLC39A11Q8N1S5 342 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 SPEM1Q8N4L4 309 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 SDR42E1Q8WUS8 393 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 AUTS2Q8WXX7 1259 aa12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 FCRL3Q96P31 734 aaPredicted RBP12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 NDRG2Q9UN36 371 aaKnown RBP12.63□□□□□ -0.39
HDGFL3-204ENST00000563790 SALL3Q9BXA9 1300 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 CCDC195A0A1B0GUA6 201 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 PLA2G6O60733 806 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 RPP40O75818 363 aaKnown RBP12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 PAPLNO95428 1278 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 CTSAP10619 480 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 ZAP70P43403 619 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 UAP1L1Q3KQV9 507 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 HSDL1Q3SXM5 330 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 TAF2Q6P1X5 1199 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 GET4Q7L5D6 327 aaPredicted RBP12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 VPS52Q8N1B4 723 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 STAG1Q8WVM7 1258 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 MKL1Q969V6 931 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 PADI3Q9ULW8 664 aa12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 TNRC6BQ9UPQ9 1833 aaKnown RBP12.62□□□□□ -0.39
HDGFL3-204ENST00000563790 SVILO95425 2214 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 MAGEB6P1A0A0J9YX57 407 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 UPK3BL1B0FP48 263 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 UPK3BL2E5RIL1 263 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 CAVIN2O95810 425 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 SNAP25P60880 206 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 RPS6P62753 249 aaKnown RBP12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 WDR43Q15061 677 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 C12orf60Q5U649 245 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 MYSM1Q5VVJ2 828 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 PDXDC2PQ6P474 469 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 RNF207Q6ZRF8 634 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 MTSS1LQ765P7 747 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 KRT25Q7Z3Z0 450 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 LMBR1Q8WVP7 490 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 TMX1Q9H3N1 280 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 LMAN1LQ9HAT1 526 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 HEBP1Q9NRV9 189 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 CLIP2Q9UDT6 1046 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 SUPT16HQ9Y5B9 1047 aaKnown RBP12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 CDY2AQ9Y6F7 541 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 HIVEP1P15822 2718 aa12.61□□□□□ -0.39
HDGFL3-204ENST00000563790 ZMYM2Q9UBW7 1377 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 ERVH48-1M5A8F1 160 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 MAN2B1O00754 1011 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 GABBR2O75899 941 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 IBSPP21815 317 aaPredicted RBP12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 POLGP54098 1239 aaPredicted RBP12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 TTC39AQ5SRH9 613 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 RSPH3Q86UC2 560 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 ADAMTS14Q8WXS8 1223 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 SMG7Q92540 1137 aaKnown RBP12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 WBP1Q96G27 269 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 TCP11L1Q9NUJ3 509 aa12.6□□□□□ -0.39
HDGFL3-204ENST00000563790 VWA8A3KMH1 1905 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 BCLAF3A2AJT9 711 aaKnown RBP12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 INPPL1O15357 1258 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 AKAP3O75969 853 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 C6P13671 934 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 ITPKBP27987 946 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 ARHGAP4P98171 946 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 IKQ13123 557 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 FAM43BQ6ZT52 329 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 CLEC4DQ8WXI8 215 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 ZNF707Q96C28 371 aaPredicted RBP12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 SPATA33Q96N06 139 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 DNMT3LQ9UJW3 386 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 MED13LQ71F56 2210 aa12.59□□□□□ -0.39
HDGFL3-204ENST00000563790 BSNQ9UPA5 3926 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms