RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CACNA1IQ9P0X4 2223 aa11.84□□□□□ -0.51
SF3B3-204ENST00000563739 MAP1BP46821 2468 aaKnown RBP11.83□□□□□ -0.52
SF3B3-204ENST00000563739 KRBA1A5PL33 1030 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 MEIS3P2A8K0S8 358 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 HIP1O00291 1037 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 MEIS1O00470 390 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 MAFGO15525 162 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 EDIL3O43854 480 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 HBP1O60381 514 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 MTHFRP42898 656 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 CLK2P49760 499 aaKnown RBP11.83□□□□□ -0.52
SF3B3-204ENST00000563739 CLCN3P51790 818 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 TPRNQ4KMQ1 711 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 POTEGQ6S5H5 508 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 TMTC3Q6ZXV5 915 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 TMC7Q7Z402 723 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 CATIPQ7Z7H3 387 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 TDRD5Q8NAT2 981 aaKnown RBP11.83□□□□□ -0.52
SF3B3-204ENST00000563739 ZNF668Q96K58 619 aaPredicted RBP11.83□□□□□ -0.52
SF3B3-204ENST00000563739 AZI2Q9H6S1 392 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 SPG21Q9NZD8 308 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 DLGAP2Q9P1A6 1054 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 DUSP12Q9UNI6 340 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 USTQ9Y2C2 406 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 IRAK3Q9Y616 596 aa11.83□□□□□ -0.52
SF3B3-204ENST00000563739 SETXQ7Z333 2677 aaKnown RBP11.82□□□□□ -0.52
SF3B3-204ENST00000563739 FAM86B1E9PN63 330 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 DDX39AO00148 427 aaKnown RBP11.82□□□□□ -0.52
SF3B3-204ENST00000563739 ZNF862O60290 1169 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 FAM86B2P0C5J1 330 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 SRGAP2BP0DMP2 458 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 FGFR4P22455 802 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 CHMLP26374 656 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 PPM1AP35813 382 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 SMC1AQ14683 1233 aaKnown RBP11.82□□□□□ -0.52
SF3B3-204ENST00000563739 CEP55Q53EZ4 464 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 DTWD2Q8NBA8 298 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 NCOA7Q8NI08 942 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 HELQQ8TDG4 1101 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 ANO3Q9BYT9 981 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 MYH15Q9Y2K3 1946 aa11.82□□□□□ -0.52
SF3B3-204ENST00000563739 ANKRD11Q6UB99 2663 aaPredicted RBP11.82□□□□□ -0.52
SF3B3-204ENST00000563739 GPR182O15218 404 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 SREBF1P36956 1147 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 SLC26A2P50443 739 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 METAP2P50579 478 aaKnown RBP eCLIP11.81□□□□□ -0.52
SF3B3-204ENST00000563739 BCAR1P56945 870 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 DRP2Q13474 957 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 ZNF484Q5JVG2 852 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 TTC22Q5TAA0 569 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 TMC5Q6UXY8 1006 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 FAM43BQ6ZT52 329 aaPredicted RBP11.81□□□□□ -0.52
SF3B3-204ENST00000563739 FLCNQ8NFG4 579 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 CTCFLQ8NI51 663 aaPredicted RBP11.81□□□□□ -0.52
SF3B3-204ENST00000563739 CEP89Q96ST8 783 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 ZBTB47Q9UFB7 747 aaPredicted RBP11.81□□□□□ -0.52
SF3B3-204ENST00000563739 MAFBQ9Y5Q3 323 aaPredicted RBP11.81□□□□□ -0.52
SF3B3-204ENST00000563739 R4GN57 208 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 MIA3Q5JRA6 1907 aa11.81□□□□□ -0.52
SF3B3-204ENST00000563739 MTCL1Q9Y4B5 1905 aaKnown RBP11.8□□□□□ -0.52
SF3B3-204ENST00000563739 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.8□□□□□ -0.52
SF3B3-204ENST00000563739 SPDYE3A6NKU9 549 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 SGSM2O43147 1006 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 PRC1O43663 620 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 LILRB3O75022 631 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 CTSAP10619 480 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 GPC3P51654 580 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 TRDNQ13061 729 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 PTPN14Q15678 1187 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 CES5AQ6NT32 575 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 RALYLQ86SE5 291 aaKnown RBP11.8□□□□□ -0.52
SF3B3-204ENST00000563739 GPR149Q86SP6 731 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 LRRC71Q8N4P6 559 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 RSAD2Q8WXG1 361 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 MAP4K1Q92918 833 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 LENG9Q96B70 501 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 SDF4Q9BRK5 362 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 KCNK12Q9HB15 430 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 RIC8AQ9NPQ8 531 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 ZNF302Q9NR11 478 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 CYP26B1Q9NR63 512 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 DZANK1Q9NVP4 752 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 DLL3Q9NYJ7 618 aa11.8□□□□□ -0.52
SF3B3-204ENST00000563739 SEC63Q9UGP8 760 aaKnown RBP11.8□□□□□ -0.52
SF3B3-204ENST00000563739 PUF60Q9UHX1 559 aaKnown RBP11.8□□□□□ -0.52
SF3B3-204ENST00000563739 A0A0U1RQF3 1178 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 ERICH2A1L162 156 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 POTEMA6NI47 508 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 CSDE1O75534 798 aaKnown RBP11.79□□□□□ -0.52
SF3B3-204ENST00000563739 PAPLNO95428 1278 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 EFEMP2O95967 443 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 DARSP14868 501 aaKnown RBP11.79□□□□□ -0.52
SF3B3-204ENST00000563739 GLULP15104 373 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 AFF1P51825 1210 aaKnown RBP11.79□□□□□ -0.52
SF3B3-204ENST00000563739 NLRP11P59045 1033 aaKnown RBP11.79□□□□□ -0.52
SF3B3-204ENST00000563739 UGCGQ16739 394 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 SWSAP1Q6NVH7 229 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 PDXDC2PQ6P474 469 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 NIPA1Q7RTP0 329 aa11.79□□□□□ -0.52
SF3B3-204ENST00000563739 HEATR3Q7Z4Q2 680 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms