RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 COASYQ13057 564 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 KMT5BQ4FZB7 885 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 NT5DC1Q5TFE4 455 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 SFR1Q86XK3 245 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 METTL13Q8N6R0 699 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 SMARCE1Q969G3 411 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 JPH2Q9BR39 696 aaPredicted RBP18.38■□□□□ 0.53
VPS4A-202ENST00000562754 PANK4Q9NVE7 773 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 KIAA1468Q9P260 1216 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 PCDHA2Q9Y5H9 948 aa18.38■□□□□ 0.53
VPS4A-202ENST00000562754 PVALEFA0A1B0GWK0 134 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 SMC2O95347 1197 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 CYP2C9P11712 490 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 CAPN2P17655 700 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 EN2P19622 333 aaPredicted RBP18.37■□□□□ 0.53
VPS4A-202ENST00000562754 GLRA2P23416 452 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 CCDC65Q8IXS2 484 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 EXOC8Q8IYI6 725 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 RETREG2Q8NC44 543 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 KIFAP3Q92845 792 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 WNT8BQ93098 351 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 HPS3Q969F9 1004 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 PAWRQ96IZ0 340 aaKnown RBP18.37■□□□□ 0.53
VPS4A-202ENST00000562754 DRC1Q96MC2 740 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 ZHX3Q9H4I2 956 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 TRMT13Q9NUP7 481 aaKnown RBP18.37■□□□□ 0.53
VPS4A-202ENST00000562754 MAN1B1Q9UKM7 699 aa18.37■□□□□ 0.53
VPS4A-202ENST00000562754 BRCA2P51587 3418 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 SMIM35A0A1B0GVV1 85 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 B4GALT4O60513 344 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 SIP14410 1827 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 ATN1P54259 1190 aaPredicted RBP18.36■□□□□ 0.53
VPS4A-202ENST00000562754 SNX17Q15036 470 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 PTGISQ16647 500 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 IER5Q5VY09 327 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 SLC39A5Q6ZMH5 540 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 UBE2Q1Q7Z7E8 422 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 SERINC5Q86VE9 423 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 KIAA0319LQ8IZA0 1049 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 TCP11Q8WWU5 503 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 ABHD8Q96I13 439 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 GSDMAQ96QA5 445 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 FIZ1Q96SL8 496 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 FAM49AQ9H0Q0 323 aaPredicted RBP18.36■□□□□ 0.53
VPS4A-202ENST00000562754 TRPV6Q9H1D0 765 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 C11orf49Q9H6J7 331 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 PARVGQ9HBI0 331 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 EXOC1Q9NV70 894 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 SUCLA2Q9P2R7 463 aaPredicted RBP18.36■□□□□ 0.53
VPS4A-202ENST00000562754 COL4A3BPQ9Y5P4 624 aa18.36■□□□□ 0.53
VPS4A-202ENST00000562754 BIN1O00499 593 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 RHOBTB3O94955 611 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 PLS3P13797 630 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 GAP43P17677 238 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 RTP1P59025 263 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 CAPSQ13938 189 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 KCNB1Q14721 858 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 ZSCAN23Q3MJ62 389 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 KSR1Q8IVT5 923 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 FAM126BQ8IXS8 530 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 PRPF31Q8WWY3 499 aaKnown RBP18.35■□□□□ 0.53
VPS4A-202ENST00000562754 PSPC1Q8WXF1 523 aaKnown RBP18.35■□□□□ 0.53
VPS4A-202ENST00000562754 DHX38Q92620 1227 aaKnown RBP18.35■□□□□ 0.53
VPS4A-202ENST00000562754 SEZ6LQ9BYH1 1024 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 FGFBP2Q9BYJ0 223 aa18.35■□□□□ 0.53
VPS4A-202ENST00000562754 ADGRA3Q8IWK6 1321 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 ALPK3Q96L96 1907 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 VTNP04004 478 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 BMP6P22004 513 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 TMOD1P28289 359 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 DNM2P50570 870 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 PEX3P56589 373 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 LAMTOR4Q0VGL1 99 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 MORC3Q14149 939 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 TRIM71Q2Q1W2 868 aaKnown RBP18.34■□□□□ 0.53
VPS4A-202ENST00000562754 HERC4Q5GLZ8 1057 aaPredicted RBP18.34■□□□□ 0.53
VPS4A-202ENST00000562754 FAM26FQ5R3K3 315 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 ODR4Q5SWX8 454 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 TAF2Q6P1X5 1199 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 MYCT1Q8N699 235 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 GLIS3Q8NEA6 775 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 DNAJB3Q8WWF6 145 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 MAP7D2Q96T17 732 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 KIFC3Q9BVG8 833 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 TBC1D7Q9P0N9 293 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 AKT3Q9Y243 479 aa18.34■□□□□ 0.53
VPS4A-202ENST00000562754 SYCE3A1L190 88 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 NPTX2P47972 431 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 PTK7Q13308 1070 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 TRIM60Q495X7 471 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 C1orf53Q5VUE5 145 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 ISM2Q6H9L7 571 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 NECAB2Q7Z6G3 386 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 RHPN2Q8IUC4 686 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 KIAA0895Q8NCT3 520 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 ZNF668Q96K58 619 aaPredicted RBP18.33■□□□□ 0.52
VPS4A-202ENST00000562754 PPP1R16BQ96T49 567 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 C17orf75Q9HAS0 396 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 OLFML3Q9NRN5 406 aa18.33■□□□□ 0.52
VPS4A-202ENST00000562754 RMND1Q9NWS8 449 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms