RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ITGB3P05106 788 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 GPR15P49685 360 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 ADCY2Q08462 1091 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 DDB1Q16531 1140 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 TBC1D10BQ4KMP7 808 aaPredicted RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 AGBL4Q5VU57 503 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 KLHDC10Q6PID8 442 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 ARHGEF18Q6ZSZ5 1173 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 FRMD7Q6ZUT3 714 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 ZDHHC14Q8IZN3 488 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 RTF1Q92541 710 aaKnown RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 NKD2Q969F2 451 aaPredicted RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 GFM2Q969S9 779 aaKnown RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 RBM15Q96T37 977 aaKnown RBP eCLIP4.66□□□□□ -1.66
VPS35-203ENST00000562420 SSBP3Q9BWW4 388 aaPredicted RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 OSBPL6Q9BZF3 934 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 MEGF9Q9H1U4 602 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 OR10A2Q9H208 303 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 ADAM7Q9H2U9 754 aa4.66□□□□□ -1.66
VPS35-203ENST00000562420 POLR3BQ9NW08 1133 aaPredicted RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 SAE1Q9UBE0 346 aaPredicted RBP4.66□□□□□ -1.66
VPS35-203ENST00000562420 ST20-MTHFSA0A0A6YYL1 179 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 K7ESF4 209 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 ARHGAP6O43182 974 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 PRICKLE3O43900 615 aaPredicted RBP4.65□□□□□ -1.67
VPS35-203ENST00000562420 OPHN1O60890 802 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 ZNF888P0CJ79 500 aaPredicted RBP4.65□□□□□ -1.67
VPS35-203ENST00000562420 SYN1P17600 705 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 ADCY8P40145 1251 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 MEOX1P50221 254 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 KCNQ1P51787 676 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 STRN3Q13033 797 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 RNF219Q5W0B1 726 aaPredicted RBP4.65□□□□□ -1.67
VPS35-203ENST00000562420 USP30Q70CQ3 517 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 STRA8Q7Z7C7 330 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 CXorf67Q86X51 503 aaPredicted RBP4.65□□□□□ -1.67
VPS35-203ENST00000562420 PPP1R14CQ8TAE6 165 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 ZNF496Q96IT1 587 aaPredicted RBP4.65□□□□□ -1.67
VPS35-203ENST00000562420 MYL10Q9BUA6 226 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 BRINP2Q9C0B6 783 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 POFUT1Q9H488 388 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 MTG2Q9H4K7 406 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 MSRAQ9UJ68 235 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 MCM8Q9UJA3 840 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 ZDHHC9Q9Y397 364 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 CTDP1Q9Y5B0 961 aaPredicted RBP4.65□□□□□ -1.67
VPS35-203ENST00000562420 NUMBLQ9Y6R0 609 aa4.65□□□□□ -1.67
VPS35-203ENST00000562420 GPR39O43194 453 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 KDM1AO60341 852 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 H2AFYO75367 372 aaKnown RBP4.64□□□□□ -1.67
VPS35-203ENST00000562420 PFKMP08237 780 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 HSP90B1P14625 803 aaKnown RBP4.64□□□□□ -1.67
VPS35-203ENST00000562420 POU3F3P20264 500 aaPredicted RBP4.64□□□□□ -1.67
VPS35-203ENST00000562420 MRE11P49959 708 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 MANFP55145 182 aaKnown RBP4.64□□□□□ -1.67
VPS35-203ENST00000562420 NFKB2Q00653 900 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 HGFACQ04756 655 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 STAT4Q14765 748 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 NOLC1Q14978 699 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS35-203ENST00000562420 PCOLCEQ15113 449 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 MAN2A1Q16706 1144 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 BROXQ5VW32 411 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 LARP4Q71RC2 724 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS35-203ENST00000562420 GPR155Q7Z3F1 870 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 NECAB2Q7Z6G3 386 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 FERMT3Q86UX7 667 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 SPATS2Q86XZ4 545 aaKnown RBP4.64□□□□□ -1.67
VPS35-203ENST00000562420 RTKN2Q8IZC4 609 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 FERMT2Q96AC1 680 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 SAMD11Q96NU1 681 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 ACAP3Q96P50 834 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 KCNG1Q9UIX4 513 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 SYNPO2Q9UMS6 1093 aa4.64□□□□□ -1.67
VPS35-203ENST00000562420 ELL2O00472 640 aaPredicted RBP4.63□□□□□ -1.67
VPS35-203ENST00000562420 MTSS1O43312 755 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 B4GALT4O60513 344 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 RAB11FIP3O75154 756 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 SEC24DO94855 1032 aaPredicted RBP4.63□□□□□ -1.67
VPS35-203ENST00000562420 CNGA1P29973 690 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 RAC3P60763 192 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 EFEMP1Q12805 493 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 GAGE13Q4V321 117 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 ZBTB41Q5SVQ8 909 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 FILIP1Q7Z7B0 1213 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 UBR7Q8N806 425 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 CDYL2Q8N8U2 506 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 CLRN3Q8NCR9 226 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 CFHR4Q92496 578 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 SLC7A6OSQ96CW6 309 aaPredicted RBP4.63□□□□□ -1.67
VPS35-203ENST00000562420 DYDC2Q96IM9 177 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 HIST1H2AHQ96KK5 128 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 WDR92Q96MX6 357 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 HIST1H2AJQ99878 128 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 PPP4R1LQ9P1A2 415 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 CDC42EP3Q9UKI2 254 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 OAZ3Q9UMX2 235 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.63□□□□□ -1.67
VPS35-203ENST00000562420 PCDHB6Q9Y5E3 794 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 MYPNQ86TC9 1320 aa4.63□□□□□ -1.67
VPS35-203ENST00000562420 NRP2O60462 931 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms