RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MYH9P35579 1960 aaKnown RBP18.6■□□□□ 0.57
CLN3-208ENST00000561505 ZDBF2Q9HCK1 2354 aa18.6■□□□□ 0.57
CLN3-208ENST00000561505 HIDE1A8MVS5 230 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 WDR64B1ANS9 1081 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 DARSP14868 501 aaKnown RBP18.59■□□□□ 0.57
CLN3-208ENST00000561505 METAP2P50579 478 aaKnown RBP eCLIP18.59■□□□□ 0.57
CLN3-208ENST00000561505 GPC3P51654 580 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 USP11P51784 963 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 SPOUT1Q5T280 376 aaKnown RBP18.59■□□□□ 0.57
CLN3-208ENST00000561505 CKAP2LQ8IYA6 745 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 LRRC43Q8N309 656 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 METTL13Q8N6R0 699 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 RSPH1Q8WYR4 309 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 SLC5A5Q92911 643 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 WDR81Q562E7 1941 aa18.59■□□□□ 0.57
CLN3-208ENST00000561505 IGKV6-21A0A0C4DH24 114 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 MSH4O15457 936 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 STBD1O95210 358 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 OATP04181 439 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 TMOD1P28289 359 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 PTPN5P54829 565 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 APOBRQ0VD83 1088 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 TCF15Q12870 199 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 PTPN21Q16825 1174 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 PRR16Q569H4 304 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 CLLU1OSQ5K130 101 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 SLC39A11Q8N1S5 342 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 MRPL43Q8N983 215 aaKnown RBP18.58■□□□□ 0.56
CLN3-208ENST00000561505 RPGRIP1Q96KN7 1286 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 ZNF558Q96NG5 402 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 MAP7D2Q96T17 732 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 TCF25Q9BQ70 676 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 RNF26Q9BY78 433 aaPredicted RBP18.58■□□□□ 0.56
CLN3-208ENST00000561505 DISC1Q9NRI5 854 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 NRBP2Q9NSY0 501 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 SPG21Q9NZD8 308 aa18.58■□□□□ 0.56
CLN3-208ENST00000561505 KMT2EQ8IZD2 1858 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 SRGAP2BP0DMP2 458 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 ZSCAN20P17040 1043 aaPredicted RBP18.57■□□□□ 0.56
CLN3-208ENST00000561505 IFNAR1P17181 557 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 SFNP31947 248 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 RDM1Q8NG50 284 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 BICD2Q8TD16 824 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 PPP1R16BQ96T49 567 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 NIFKQ9BYG3 293 aaKnown RBP18.57■□□□□ 0.56
CLN3-208ENST00000561505 SH3GLB2Q9NR46 395 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 CHST12Q9NRB3 414 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 IRAK3Q9Y616 596 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 CACNA1HO95180 2353 aa18.57■□□□□ 0.56
CLN3-208ENST00000561505 CYP3A7-CYP3A51PA0A087WV96 503 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 C2orf71A6NGG8 1288 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 PSMD10O75832 226 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 CYP3A7P24462 503 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 HSPA4P34932 840 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 TECP42680 631 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 NUBP1P53384 320 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 CDC42EP1Q00587 391 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 KRT17Q04695 432 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 PLPP4Q5VZY2 271 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 Q6ZUG5 572 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 LRRC71Q8N4P6 559 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 BRF1Q92994 677 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 PHOX2BQ99453 314 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 AKT3Q9Y243 479 aa18.56■□□□□ 0.56
CLN3-208ENST00000561505 CDC45O75419 566 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 CPA1P15085 419 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 JAK3P52333 1124 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 PRKCEQ02156 737 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 ITIH3Q06033 890 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 UGCGQ16739 394 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 Q4G0T1 1027 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 SUGP1Q8IWZ8 645 aaKnown RBP18.55■□□□□ 0.56
CLN3-208ENST00000561505 CASP10Q92851 521 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 MBOAT7Q96N66 472 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 ADAM7Q9H2U9 754 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 TCEAL9Q9UHQ7 104 aa18.55■□□□□ 0.56
CLN3-208ENST00000561505 CARNS1A5YM72 827 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 M0R2N6 131 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 IBSPP21815 317 aaPredicted RBP18.54■□□□□ 0.56
CLN3-208ENST00000561505 AVPR2P30518 371 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 TMC7Q7Z402 723 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 CCDC148Q8NFR7 591 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 PHKBQ93100 1093 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 CCDC136Q96JN2 1154 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 MRPL9Q9BYD2 267 aaKnown RBP18.54■□□□□ 0.56
CLN3-208ENST00000561505 UNC45AQ9H3U1 944 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 ENTPD7Q9NQZ7 604 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 DACT1Q9NYF0 836 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 SNX14Q9Y5W7 946 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 HCFC2Q9Y5Z7 792 aa18.54■□□□□ 0.56
CLN3-208ENST00000561505 CLASP2O75122 1294 aaKnown RBP18.53■□□□□ 0.56
CLN3-208ENST00000561505 ZNF623O75123 536 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 PBX3P40426 434 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 DRP2Q13474 957 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 SMC1AQ14683 1233 aaKnown RBP18.53■□□□□ 0.56
CLN3-208ENST00000561505 TPRNQ4KMQ1 711 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 XKR3Q5GH77 459 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 CENPQQ7L2Z9 268 aaPredicted RBP18.53■□□□□ 0.56
CLN3-208ENST00000561505 SKAP1Q86WV1 359 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 ABI1Q8IZP0 508 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms