RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	TESK2	Q96S53	571 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	LGR4	Q9BXB1	951 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	ZDHHC5	Q9C0B5	715 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	CDIP1	Q9H305	208 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	NRDE2	Q9H7Z3	1164 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	FBXO10	Q9UK96	956 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	SBNO2	Q9Y2G9	1366 aa		3.23	□□□□□ -1.89
SPG11-223	ENST00000560858	CAMSAP1	Q5T5Y3	1602 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	SIGLEC1	Q9BZZ2	1709 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	TRAPPC8	Q9Y2L5	1435 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858		A0A0A6YYK5	440 aa	Predicted RBP	3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	RPS6KA4	O75676	772 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	PROZ	P22891	400 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	KCNQ1	P51787	676 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	TBR1	Q16650	682 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	SV2C	Q496J9	727 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	STRIP1	Q5VSL9	837 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	SPTY2D1	Q68D10	685 aa	Predicted RBP	3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	CXXC5	Q7LFL8	322 aa	Known RBP	3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	PRIMA1	Q86XR5	153 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	GSPT2	Q8IYD1	628 aa	Known RBP	3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	GPR135	Q8IZ08	494 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	CFHR4	Q92496	578 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	TMEM176A	Q96HP8	235 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	CCDC136	Q96JN2	1154 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	DSE	Q9UL01	958 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	PCDHGB7	Q9Y5F8	929 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	NPFFR2	Q9Y5X5	522 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	EIF3A	Q14152	1382 aa	Known RBP	3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	FANCA	O15360	1455 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	ERVK-7	P63135	1459 aa		3.22	□□□□□ -1.89
SPG11-223	ENST00000560858	ZNF521	Q96K83	1311 aa		3.21	□□□□□ -1.89
SPG11-223	ENST00000560858	ADGRB1	O14514	1584 aa		3.21	□□□□□ -1.89
SPG11-223	ENST00000560858	GLI2	P10070	1586 aa		3.21	□□□□□ -1.89
SPG11-223	ENST00000560858	FRMPD1	Q5SYB0	1578 aa		3.21	□□□□□ -1.89
SPG11-223	ENST00000560858	KIF20B	Q96Q89	1820 aa		3.21	□□□□□ -1.89
SPG11-223	ENST00000560858	PMS2P1	A4D2B8	440 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	TCERG1	O14776	1098 aa	Known RBP	3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	SLC26A4	O43511	780 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	LTF	P02788	710 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	TSPY4	P0CV99	314 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	TSPY10	P0CW01	314 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	GNAT1	P11488	350 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	ANP32A	P39687	249 aa	Known RBP	3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	MEOX1	P50221	254 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	PCOLCE	Q15113	449 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	SF1	Q15637	639 aa	Known RBP	3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	ADGRG3	Q86Y34	549 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	TMEM145	Q8NBT3	493 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	SHCBP1	Q8NEM2	672 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	UHMK1	Q8TAS1	419 aa	Known RBP	3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	IPO9	Q96P70	1041 aa	Known RBP	3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	BCL2L13	Q9BXK5	485 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	OR10A2	Q9H208	303 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	SLC39A2	Q9NP94	309 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	GPR27	Q9NS67	375 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	GPRC5B	Q9NZH0	403 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	ARHGAP28	Q9P2N2	729 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	RCAN3	Q9UKA8	241 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	PLEKHH1	Q9ULM0	1364 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	ADGRL1	O94910	1474 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	MYO5B	Q9ULV0	1848 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	UGGT1	Q9NYU2	1555 aa		3.21	□□□□□ -1.9
SPG11-223	ENST00000560858	KDM2B	Q8NHM5	1336 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	INO80B-WBP1	J3KQ70	363 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	TBX1	O43435	398 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	COL6A2	P12110	1019 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	GJA4	P35212	333 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	HNRNPM	P52272	730 aa	Known RBP eCLIP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	EPHA5	P54756	1037 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	GFRA1	P56159	465 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	SLC25A3	Q00325	362 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	DBP	Q10586	325 aa	Predicted RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	EIF4H	Q15056	248 aa	Known RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	PTPA	Q15257	358 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	DENND5A	Q6IQ26	1287 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	KCTD1	Q719H9	257 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	OTOP2	Q7RTS6	562 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	MRGPRE	Q86SM8	312 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	ZNF227	Q86WZ6	799 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	SYNE4	Q8N205	404 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	WDR48	Q8TAF3	677 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	NTN5	Q8WTR8	489 aa	Predicted RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	INO80B	Q9C086	356 aa	Predicted RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	KIAA1683	Q9H0B3	1180 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	METTL5	Q9NRN9	209 aa	Known RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	HECA	Q9UBI9	543 aa	Predicted RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	ZMYM3	Q14202	1370 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	NINL	Q9Y2I6	1382 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	NKTR	P30414	1462 aa	Known RBP	3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	ZNF518A	Q6AHZ1	1483 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	NLRP1	Q9C000	1473 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	CDC42BPG	Q6DT37	1551 aa		3.2	□□□□□ -1.9
SPG11-223	ENST00000560858	NEXMIF	Q5QGS0	1516 aa		3.19	□□□□□ -1.9
SPG11-223	ENST00000560858	SETD1A	O15047	1707 aa	Known RBP	3.19	□□□□□ -1.9
SPG11-223	ENST00000560858	RICTOR	Q6R327	1708 aa		3.19	□□□□□ -1.9
SPG11-223	ENST00000560858	PROB1	E7EW31	1015 aa		3.19	□□□□□ -1.9
SPG11-223	ENST00000560858	ACOT7	O00154	380 aa		3.19	□□□□□ -1.9
SPG11-223	ENST00000560858	TRAF5	O00463	557 aa		3.19	□□□□□ -1.9
SPG11-223	ENST00000560858	ZNF37A	P17032	561 aa	Predicted RBP	3.19	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms