RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CEP55Q53EZ4 464 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ODR4Q5SWX8 454 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 FAM160B1Q5W0V3 765 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 MCTP2Q6DN12 878 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 KIAA1841Q6NSI8 718 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 CES5AQ6NT32 575 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 PDXDC2PQ6P474 469 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 NFXL1Q6ZNB6 911 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 FAM43BQ6ZT52 329 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ERMP1Q7Z2K6 904 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 TMEM173Q86WV6 379 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ECHDC2Q86YB7 292 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ZDHHC14Q8IZN3 488 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ADSSL1Q8N142 457 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 MRPL43Q8N983 215 aaKnown RBP9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 ZNF302Q9NR11 478 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 SPG21Q9NZD8 308 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 LIMD1Q9UGP4 676 aa9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 RBM8AQ9Y5S9 174 aaKnown RBP9.3□□□□□ -0.92
CCDC88C-214ENST00000557507 CCDC69A6NI79 296 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 NT5C1B-RDH14C9J2C7 533 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 FAM86B1E9PN63 330 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 MEIS1O00470 390 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 DHX15O43143 795 aaKnown RBP9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 SGSM2O43147 1006 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 HOXA2O43364 376 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 PI15O43692 258 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 FAM86B2P0C5J1 330 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 EPCAMP16422 314 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 NPR3P17342 541 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 CA8P35219 290 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 SREBF1P36956 1147 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 METAP2P50579 478 aaKnown RBP eCLIP9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 KRT17Q04695 432 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 ZNF484Q5JVG2 852 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 CASC1Q6TDU7 716 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 MICU3Q86XE3 530 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 ABI1Q8IZP0 508 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 METTL13Q8N6R0 699 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 LINC01465Q8N7H1 131 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 RNF169Q8NCN4 708 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 FLCNQ8NFG4 579 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 EXOC6Q8TAG9 804 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 HELQQ8TDG4 1101 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 RUFY2Q8WXA3 655 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 AUTS2Q8WXX7 1259 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 ZNF668Q96K58 619 aaPredicted RBP9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 LRRC2Q9BYS8 371 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 MFSD1Q9H3U5 465 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 RIC8AQ9NPQ8 531 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 KMT2BQ9UMN6 2715 aaPredicted RBP9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 COL4A3Q01955 1670 aa9.29□□□□□ -0.92
CCDC88C-214ENST00000557507 IGLV3-22A0A075B6J6 115 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 EOMESO95936 686 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 AOC1P19801 751 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 FGFR4P22455 802 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 CLCN5P51795 746 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 ADCY7P51828 1080 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 NAPAP54920 295 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 NLRP11P59045 1033 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 C1QBPQ07021 282 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 SWSAP1Q6NVH7 229 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 PPP1R18Q6NYC8 613 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 CENPQQ7L2Z9 268 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 TRMT1LQ7Z2T5 733 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 ZNF598Q86UK7 904 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 CKAP2LQ8IYA6 745 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 CCDC105Q8IYK2 499 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 LRRC71Q8N4P6 559 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 BCL7CQ8WUZ0 217 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 BBXQ8WY36 941 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 MAP4K1Q92918 833 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 MTA3Q9BTC8 594 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 ZBP1Q9H171 429 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 ADAMTS10Q9H324 1103 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 DZANK1Q9NVP4 752 aa9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 DBR1Q9UK59 544 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-214ENST00000557507 RALGAPA1Q6GYQ0 2036 aa9.27□□□□□ -0.92
CCDC88C-214ENST00000557507 FRYLO94915 3013 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 TRIP11Q15643 1979 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 MED19A0JLT2 244 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 ADAMTS3O15072 1205 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CXCL14O95715 111 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CALM1P0DP23 149 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CALM2P0DP24 149 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CALM3P0DP25 149 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 MCM5P33992 734 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 LIFRP42702 1097 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 CLK2P49760 499 aaKnown RBP9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 BCAR1P56945 870 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 FUT2Q10981 343 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 ANGPT1Q15389 498 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 MIS18BP1Q6P0N0 1132 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 TMC5Q6UXY8 1006 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 NIPA1Q7RTP0 329 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 PLA2G4DQ86XP0 818 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 VPS52Q8N1B4 723 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 FANCBQ8NB91 859 aa9.27□□□□□ -0.93
CCDC88C-214ENST00000557507 SLC22A17Q8WUG5 538 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms