RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 REEP2Q9BRK0 252 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 HTATIP2Q9BUP3 242 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 PPP1R12CQ9BZL4 782 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 POLR3FQ9H1D9 316 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-227ENST00000557269 PRDM5Q9NQX1 630 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-227ENST00000557269 SUCLA2Q9P2R7 463 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-227ENST00000557269 SFI1A8K8P3 1242 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 KIAA0355O15063 1070 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 EVI5O60447 810 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 GPR32O75388 356 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 CHRNA1P02708 482 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 CTSHP09668 335 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 PRR29P0C7W0 189 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 GLRA2P23416 452 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 GUCY2CP25092 1073 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 CYP2C18P33260 490 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 AFMP43652 599 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 RGS19P49795 217 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 RBL2Q08999 1139 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 IER5Q5VY09 327 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 DYMQ7RTS9 669 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 RPAINQ86UA6 219 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 DDX12PQ92771 950 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 DPF3Q92784 378 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 DNAJC19Q96DA6 116 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 WNT8AQ9H1J5 351 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 BLZF1Q9H2G9 400 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 HIPK3Q9H422 1215 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 CUEDC2Q9H467 287 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 AKT3Q9Y243 479 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 EVPLQ92817 2033 aa14.23□□□□□ -0.13
SHMT2-227ENST00000557269 SYN1P17600 705 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 TMOD1P28289 359 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 MRPS6P82932 125 aaKnown RBP14.22□□□□□ -0.13
SHMT2-227ENST00000557269 MGAT3Q09327 533 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 LAMTOR4Q0VGL1 99 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 CUL4BQ13620 913 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 MBTPS1Q14703 1052 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 GPNMBQ14956 572 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 KIZQ2M2Z5 673 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 RHPN2Q8IUC4 686 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 EXOC8Q8IYI6 725 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 CEP57L1Q8IYX8 460 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 CNNM3Q8NE01 707 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 MCPH1Q8NEM0 835 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 GPT2Q8TD30 523 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 JPH2Q9BR39 696 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-227ENST00000557269 PYM1Q9BRP8 204 aaKnown RBP14.22□□□□□ -0.13
SHMT2-227ENST00000557269 TNMDQ9H2S6 317 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 ADAMTS10Q9H324 1103 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 DACT1Q9NYF0 836 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 KCND2Q9NZV8 630 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 USP25Q9UHP3 1055 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 CDY2AQ9Y6F7 541 aa14.22□□□□□ -0.13
SHMT2-227ENST00000557269 LOXHD1Q8IVV2 1947 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 GAS2O43903 313 aaKnown RBP14.21□□□□□ -0.13
SHMT2-227ENST00000557269 IQCF3P0C7M6 154 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 SRGAP2CP0DJJ0 459 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 DNM2P50570 870 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 GPC3P51654 580 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 CCL23P55773 120 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 NLRP11P59045 1033 aaKnown RBP14.21□□□□□ -0.13
SHMT2-227ENST00000557269 MDM2Q00987 491 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-227ENST00000557269 BFSP2Q13515 415 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 CAPSQ13938 189 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 FAM26DQ5JW98 314 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 NME8Q8N427 588 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 CAGE1Q8TC20 777 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 TMEM40Q8WWA1 233 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 TCP11Q8WWU5 503 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 PSPC1Q8WXF1 523 aaKnown RBP14.21□□□□□ -0.13
SHMT2-227ENST00000557269 SCLYQ96I15 445 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 MAP7D2Q96T17 732 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 C7orf25Q9BPX7 421 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 TRIM9Q9C026 710 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 MAGEF1Q9HAY2 307 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 ZMYND8Q9ULU4 1186 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-227ENST00000557269 GINS2Q9Y248 185 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 COL4A3BPQ9Y5P4 624 aa14.21□□□□□ -0.13
SHMT2-227ENST00000557269 A0A087WZ62 844 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 GOLGA6L22H0YM25 854 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 PITPNM1O00562 1244 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 CSDE1O75534 798 aaKnown RBP14.2□□□□□ -0.14
SHMT2-227ENST00000557269 TIMP1P01033 207 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 KRT18P05783 430 aaKnown RBP14.2□□□□□ -0.14
SHMT2-227ENST00000557269 SELPP16109 830 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 ZNF131P52739 623 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 LRRC8DQ7L1W4 858 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 RSPH3Q86UC2 560 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 ERCC4Q92889 916 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-227ENST00000557269 VWCEQ96DN2 955 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 NLRP4Q96MN2 994 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 OSMRQ99650 979 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 FDXACB1Q9BRP7 624 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-227ENST00000557269 KIFC3Q9BVG8 833 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 CELF4Q9BZC1 486 aaKnown RBP14.2□□□□□ -0.14
SHMT2-227ENST00000557269 TRPV2Q9Y5S1 764 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 SIP14410 1827 aa14.2□□□□□ -0.14
SHMT2-227ENST00000557269 ADGRA3Q8IWK6 1321 aa14.19□□□□□ -0.14
SHMT2-227ENST00000557269 NBNO60934 754 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms