RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SART1	O43290	800 aa	Known RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MAN1A1	P33908	653 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	NSF	P46459	744 aa	Known RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	IRX1	P78414	480 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	NBPF9	Q3BBW0	867 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	XKR9	Q5GH70	373 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GLYCTK	Q8IVS8	523 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ADGRF4	Q8IZF3	695 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SUPT20H	Q8NEM7	779 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	PRCC	Q92733	491 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	CAVIN3	Q969G5	261 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	C18orf8	Q96DM3	657 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ARHGEF10L	Q9HCE6	1279 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	NPHS2	Q9NP85	383 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	C1orf112	Q9NSG2	853 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	PCDHA1	Q9Y5I3	950 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SYNGAP1	Q96PV0	1343 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	USP17L10	C9JJH3	530 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	NDC80	O14777	642 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CAND2	O75155	1236 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	NQO1	P15559	274 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SAT1	P21673	171 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SMAD1	Q15797	465 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ADGRA1	Q86SQ6	560 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	FOXP4	Q8IVH2	680 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SUGP1	Q8IWZ8	645 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PAF1	Q8N7H5	531 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	GIMAP8	Q8ND71	665 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SLC17A8	Q8NDX2	589 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ISCA1	Q9BUE6	129 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SLITRK6	Q9H5Y7	841 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	TRPC6	Q9Y210	931 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CREB3	O43889	395 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	AARS	P49588	968 aa	Known RBP eCLIP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	LIG4	P49917	911 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	COPS2	P61201	443 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	DMP1	Q13316	513 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	NT5DC1	Q5TFE4	455 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PROM2	Q8N271	834 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	TTC17	Q96AE7	1141 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SCYL1	Q96KG9	808 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	IRAK4	Q9NWZ3	460 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	TTC7A	Q9ULT0	858 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ABCC6	O95255	1503 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PNPLA7	Q6ZV29	1317 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	GYG2	O15488	501 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ESRRA	P11474	423 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	NCF2	P19878	526 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CNGA1	P29973	690 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ARL1	P40616	181 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ITIH4	Q14624	930 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SLFN13	Q68D06	897 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ARMC2	Q8NEN0	867 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	DTX3L	Q8TDB6	740 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	JDP2	Q8WYK2	163 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	GLT8D2	Q9H1C3	349 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	DCP1A	Q9NPI6	582 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CCNL1	Q9UK58	526 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	G3BP2	Q9UN86	482 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ABCB11	O95342	1321 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PITPNM2	Q9BZ72	1349 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	TCP10L2	B9ZVM9	353 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PODXL	O00592	558 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CRCP	O75575	148 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ANP32D	O95626	131 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	INHBA	P08476	426 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	BMP6	P22004	513 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	RPS8	P62241	208 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	GPC5	P78333	572 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CDR2	Q01850	454 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SPARCL1	Q14515	664 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	SLC18A3	Q16572	532 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ARHGEF16	Q5VV41	709 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PPP4R3CP	Q6ZMV5	832 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ANO3	Q9BYT9	981 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	KDM4C	Q9H3R0	1056 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	USP15	Q9Y4E8	981 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	MAD1L1	Q9Y6D9	718 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	COMMD10	Q9Y6G5	202 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	LTN1	O94822	1766 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	AGT	P01019	485 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	MT-ND3	P03897	115 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	KLRC1	P26715	233 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PRDX5	P30044	214 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ALDH18A1	P54886	795 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	BASP1	P80723	227 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	PTK2	Q05397	1052 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	IL17A	Q16552	155 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	KNOP1	Q1ED39	458 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	CERKL	Q49MI3	558 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	KIAA1755	Q5JYT7	1200 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	WDR78	Q5VTH9	848 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	DARS2	Q6PI48	645 aa	Known RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	ST13P4	Q8IZP2	240 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	KCTD6	Q8NC69	237 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	STAMBPL1	Q96FJ0	436 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	AGPAT1	Q99943	283 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	TRIM9	Q9C026	710 aa		5.35	□□□□□ -1.55
SYNE2-223	ENST00000557005	UBN1	Q9NPG3	1134 aa		5.35	□□□□□ -1.55

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