RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 RB1P06400 928 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 UQCRHP07919 91 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 MARCKSP29966 332 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-216ENST00000554975 HOXC8P31273 242 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 MRPL12P52815 198 aaKnown RBP12.43□□□□□ -0.42
SHMT2-216ENST00000554975 SIGLEC14Q08ET2 396 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 STXBP2Q15833 593 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 PKN1Q16512 942 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 SHC4Q6S5L8 630 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 STAG2Q8N3U4 1231 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 CCDC112Q8NEF3 446 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 ATP6V0A1Q93050 837 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 C11orf84Q9BUA3 381 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-216ENST00000554975 PHF20Q9BVI0 1012 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 KCNF1Q9H3M0 494 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 BCAS3Q9H6U6 928 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 BARX2Q9UMQ3 279 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-216ENST00000554975 USP15Q9Y4E8 981 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-216ENST00000554975 PCDHGC5Q9Y5F6 944 aa12.43□□□□□ -0.42
SHMT2-216ENST00000554975 EP300Q09472 2414 aaPredicted RBP12.43□□□□□ -0.42
SHMT2-216ENST00000554975 ZNF292O60281 2723 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 C17orf102A2RUQ5 167 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 PRR23AA6NEV1 266 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 BTBD18B2RXH4 712 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 PROB1E7EW31 1015 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 RRP9O43818 475 aaKnown RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 TUBB4AP04350 444 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 SCG2P13521 617 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 RBM10P98175 930 aaKnown RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 SP2Q02086 613 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 TROAPQ12815 778 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 LAMC2Q13753 1193 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 QRICH1Q2TAL8 776 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 DPCR1Q3MIW9 517 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 MYRIPQ8NFW9 859 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 NSUN6Q8TEA1 469 aaKnown RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 CCDC12Q8WUD4 166 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 GPKOWQ92917 476 aaPredicted RBP eCLIP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 CLP1Q92989 425 aaKnown RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 RMDN3Q96TC7 470 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 GJB4Q9NTQ9 266 aa12.42□□□□□ -0.42
SHMT2-216ENST00000554975 FBXO2Q9UK22 296 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 FNDC1Q4ZHG4 1894 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-216ENST00000554975 hCG_1984214I3L0E3 225 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 NR3C2P08235 984 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 SMIM10L2AP0DMW4 78 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 SMIM10L2BP0DMW5 78 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 TXLNAP40222 546 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 FUT2Q10981 343 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 COASYQ13057 564 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 SEMA3FQ13275 785 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 GRM4Q14833 912 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 POSTNQ15063 836 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 HOMER1Q86YM7 354 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 ZNF713Q8N859 430 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-216ENST00000554975 MLKLQ8NB16 471 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 SMARCE1Q969G3 411 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 ZFP91Q96JP5 570 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-216ENST00000554975 RPGRIP1Q96KN7 1286 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 SPATA33Q96N06 139 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 IWS1Q96ST2 819 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 RNPEPQ9H4A4 650 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 JMJD4Q9H9V9 463 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 MAD2L2Q9UI95 211 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 PLAGL2Q9UPG8 496 aa12.41□□□□□ -0.42
SHMT2-216ENST00000554975 ABCB11O95342 1321 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 NCOR2Q9Y618 2525 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 TPRP12270 2363 aaKnown RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 OPLAHO14841 1288 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 PPFIA4O75335 1185 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 EIF3JO75822 258 aaKnown RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 GGPS1O95749 300 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 ITGB1P05556 798 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 NRIP1P48552 1158 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 ORC2Q13416 577 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 PFKFB3Q16875 520 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 TTC38Q5R3I4 469 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 CELF3Q5SZQ8 465 aaKnown RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 NT5DC1Q5TFE4 455 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 ARHGEF16Q5VV41 709 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 RBM23Q86U06 439 aaKnown RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 EFHBQ8N7U6 833 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 IL31RAQ8NI17 732 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 ZNF689Q96CS4 500 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 PHF7Q9BWX1 381 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 PXMP2Q9NR77 195 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 KCND1Q9NSA2 647 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 KCNJ14Q9UNX9 436 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 MRPL11Q9Y3B7 192 aaKnown RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 TELO2Q9Y4R8 837 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 MRPL42Q9Y6G3 142 aaKnown RBP12.4□□□□□ -0.42
SHMT2-216ENST00000554975 EPG5Q9HCE0 2579 aa12.4□□□□□ -0.42
SHMT2-216ENST00000554975 PALM3A6NDB9 673 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-216ENST00000554975 H3BRB1 525 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 CHRNA1P02708 482 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 LGALS2P05162 132 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 UBA1P22314 1058 aaKnown RBP12.39□□□□□ -0.43
SHMT2-216ENST00000554975 SFPQP23246 707 aaKnown RBP eCLIP12.39□□□□□ -0.43
SHMT2-216ENST00000554975 FAM26DQ5JW98 314 aa12.39□□□□□ -0.43
SHMT2-216ENST00000554975 ARL6IP4Q66PJ3 421 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms