RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 PLS3P13797 630 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 HOXC8P31273 242 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 NLRP12P59046 1061 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 CDC42EP1Q00587 391 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 TYRO3Q06418 890 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 MORC3Q14149 939 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 TFDP1Q14186 410 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 MTFR1Q15390 333 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 COBLL1Q53SF7 1204 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 HERC4Q5GLZ8 1057 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-210ENST00000553950 TAF2Q6P1X5 1199 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 LRSAM1Q6UWE0 723 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 FAM178BQ8IXR5 827 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 MYCT1Q8N699 235 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 MLKLQ8NB16 471 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 HVCN1Q96D96 273 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 TMEM106CQ9BVX2 250 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 CRISPLD2Q9H0B8 497 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 POLR3FQ9H1D9 316 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-210ENST00000553950 STARD7Q9NQZ5 370 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 PDLIM7Q9NR12 457 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 GTF2IRD1Q9UHL9 959 aa16.04■□□□□ 0.16
SHMT2-210ENST00000553950 MROH7Q68CQ1 1323 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 A0A087WWV3 80 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 A0A1W2PQ45 241 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-210ENST00000553950 A0A1W2PQY0 241 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 MBLAC1A4D2B0 266 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-210ENST00000553950 EIF3DO15371 548 aaKnown RBP eCLIP16.03■□□□□ 0.16
SHMT2-210ENST00000553950 SGPL1O95470 568 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 CASP1P29466 404 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 NAMPTP43490 491 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 CHMP4BP1P59074 171 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 IGBP1P78318 339 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 EHHADHQ08426 723 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 RAD51AP2Q09MP3 1159 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 MAPK7Q13164 816 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 ODR4Q5SWX8 454 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 MTHFD1LQ6UB35 978 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 SFR1Q86XK3 245 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 U2AF1L4Q8WU68 220 aaKnown RBP16.03■□□□□ 0.16
SHMT2-210ENST00000553950 SPIRE2Q8WWL2 714 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 XPNPEP1Q9NQW7 623 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 PCDHA2Q9Y5H9 948 aa16.03■□□□□ 0.16
SHMT2-210ENST00000553950 NPHP3-ACAD11A0A0J9YXS1 232 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 SMIM35A0A1B0GVV1 85 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 BIN1O00499 593 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 PSMA7O14818 248 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 KLRC1P26715 233 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 GJA8P48165 433 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 ITGA7Q13683 1181 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 NBPF20Q3BBV1 942 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 FAM47CQ5HY64 1035 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 EFCAB12Q6NXP0 572 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 RSPH3Q86UC2 560 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 METTL13Q8N6R0 699 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 ERCC4Q92889 916 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-210ENST00000553950 KCNN1Q92952 543 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 VTI1AQ96AJ9 217 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 SH2D3AQ9BRG2 576 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 C2orf40Q9H1Z8 148 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 TSPY26PQ9H489 355 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 ST6GALNAC4Q9H4F1 302 aa16.02■□□□□ 0.16
SHMT2-210ENST00000553950 MRPL44Q9H9J2 332 aaKnown RBP16.02■□□□□ 0.16
SHMT2-210ENST00000553950 RSPH10B2B2RC85 870 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 K7ENM7 598 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 TFRCP02786 760 aaKnown RBP16.01■□□□□ 0.15
SHMT2-210ENST00000553950 RSPH10BP0C881 870 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 ARL2P36404 184 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 IRX5P78411 483 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-210ENST00000553950 CACNB1Q02641 598 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-210ENST00000553950 ZBTB8OSQ8IWT0 167 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 DAW1Q8N136 415 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 FUCA2Q9BTY2 467 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 MCOLN1Q9GZU1 580 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 SUGCTQ9HAC7 445 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 SETD4Q9NVD3 440 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 HDAC6Q9UBN7 1215 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 PCDHB13Q9Y5F0 798 aa16.01■□□□□ 0.15
SHMT2-210ENST00000553950 M0QZ92 97 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 CAND2O75155 1236 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 GCNT3O95395 438 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 CYP2C9P11712 490 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 EFNA5P52803 228 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 NCKAP1LP55160 1127 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 PEX3P56589 373 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 ADAM17P78536 824 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 POU5F1BQ06416 359 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 MAEAQ7L5Y9 396 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 ZNF410Q86VK4 478 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 MYOCDQ8IZQ8 938 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 NME8Q8N427 588 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 GUF1Q8N442 669 aaKnown RBP16■□□□□ 0.15
SHMT2-210ENST00000553950 LINC01465Q8N7H1 131 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 DEPTORQ8TB45 409 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 TRAPPC12Q8WVT3 735 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 NFKBIZQ9BYH8 718 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 KMT5AQ9NQR1 393 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 SUCLA2Q9P2R7 463 aaPredicted RBP16■□□□□ 0.15
SHMT2-210ENST00000553950 EXOC7Q9UPT5 735 aa16■□□□□ 0.15
SHMT2-210ENST00000553950 NOD1Q9Y239 953 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms