RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MYL3P08590 195 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 PLS3P13797 630 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 BMP6P22004 513 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 KLRC1P26715 233 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 NCKAP1LP55160 1127 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 RBL2Q08999 1139 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 TBC1D8BQ0IIM8 1120 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 COASYQ13057 564 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 PPFIA1Q13136 1202 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 HIC1Q14526 733 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 MXD4Q14582 209 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-211ENST00000552338 EMC2Q15006 297 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 SNX17Q15036 470 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 NBPF20Q3BBV1 942 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 MTERF2Q49AM1 385 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 FAM43BQ6ZT52 329 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-211ENST00000552338 EPM2AIP1Q7L775 607 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-211ENST00000552338 DYMQ7RTS9 669 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 ZNF720Q7Z2F6 126 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 NME8Q8N427 588 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 RETREG2Q8NC44 543 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 ZNF507Q8TCN5 953 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 LMBR1Q8WVP7 490 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 CCDC47Q96A33 483 aaKnown RBP10.61□□□□□ -0.71
LIMA1-211ENST00000552338 GLT1D1Q96MS3 346 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 DEFB118Q96PH6 123 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 CTAGE1Q96RT6 745 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 MCOLN1Q9GZU1 580 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 BLZF1Q9H2G9 400 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 PANK4Q9NVE7 773 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 HDAC6Q9UBN7 1215 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 TRPC6Q9Y210 931 aa10.61□□□□□ -0.71
LIMA1-211ENST00000552338 A0A0U1RQG5 324 aaPredicted RBP10.6□□□□□ -0.71
LIMA1-211ENST00000552338 A0A1W2PQ45 241 aaPredicted RBP10.6□□□□□ -0.71
LIMA1-211ENST00000552338 A0A1W2PQY0 241 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 C17orf102A2RUQ5 167 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 KBTBD13C9JR72 458 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 ARVCFO00192 962 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 EIF3DO15371 548 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIMA1-211ENST00000552338 USO1O60763 962 aaKnown RBP10.6□□□□□ -0.71
LIMA1-211ENST00000552338 MARK3P27448 753 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 TMOD1P28289 359 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 CASP1P29466 404 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 NAMPTP43490 491 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 POLGP54098 1239 aaPredicted RBP10.6□□□□□ -0.71
LIMA1-211ENST00000552338 NLRP12P59046 1061 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 ASIC1P78348 528 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 GTF2BQ00403 316 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 ITGA7Q13683 1181 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 ALCAMQ13740 583 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 PPP2R5AQ15172 486 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 BMT2Q1RMZ1 405 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 TPRNQ4KMQ1 711 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 EFCAB12Q6NXP0 572 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 TAF2Q6P1X5 1199 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 LRSAM1Q6UWE0 723 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 MLKLQ8NB16 471 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 HVCN1Q96D96 273 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 CCDC43Q96MW1 224 aaKnown RBP10.6□□□□□ -0.71
LIMA1-211ENST00000552338 TMEM134Q9H6X4 195 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 ARHGAP28Q9P2N2 729 aa10.6□□□□□ -0.71
LIMA1-211ENST00000552338 UBE4BO95155 1302 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 PHLPP2Q6ZVD8 1323 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 CENPFP49454 3210 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 NPHP3-ACAD11A0A0J9YXS1 232 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 RSPH10B2B2RC85 870 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 H0YCG3 227 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 CAND2O75155 1236 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 SSBP05455 408 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 RSPH10BP0C881 870 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 CCDC192P0DO97 292 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 GLRA2P23416 452 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 DNM2P50570 870 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 STK4Q13043 487 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 DHX8Q14562 1220 aaKnown RBP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 PCBP1Q15365 356 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 HERC4Q5GLZ8 1057 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 FAM26FQ5R3K3 315 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 CDCA2Q69YH5 1023 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 SASS6Q6UVJ0 657 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 ANKRD33Q7Z3H0 272 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 UBE2Q1Q7Z7E8 422 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 SERINC5Q86VE9 423 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 ZNF410Q86VK4 478 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 KIAA0319LQ8IZA0 1049 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 GUF1Q8N442 669 aaKnown RBP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 C7orf31Q8N865 590 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 KIAA0895Q8NCT3 520 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 PSPC1Q8WXF1 523 aaKnown RBP10.59□□□□□ -0.71
LIMA1-211ENST00000552338 TOX2Q96NM4 488 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 BPIFA3Q9BQP9 254 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 SH2D3AQ9BRG2 576 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 STARD7Q9NQZ5 370 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 EXOC1Q9NV70 894 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 SETD4Q9NVD3 440 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 ANO10Q9NW15 660 aa10.59□□□□□ -0.71
LIMA1-211ENST00000552338 SYCE3A1L190 88 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 PPP1R3GB7ZBB8 358 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 TREHO43280 583 aa10.58□□□□□ -0.72
LIMA1-211ENST00000552338 TBCAO75347 108 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms