RNA–Protein interactions for RNA: ENST00000552301.1

PRPF40B-216, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 912 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-216ENST00000552301 ARHGEF35A5YM69 484 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 RBAK-RBAKDNI3L0D1 243 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 GJB5O95377 273 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 EIF4BP23588 611 aaKnown RBP20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 MKRN4PQ13434 485 aaPredicted RBP20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 BECN1Q14457 450 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 PPP2R2DQ66LE6 453 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 ZNF410Q86VK4 478 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 TMEM143Q96AN5 459 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 FAM161BQ96MY7 647 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 ADAMTS10Q9H324 1103 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 ERVK-5Q9HDB9 667 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 DBR1Q9UK59 544 aaKnown RBP20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 YBX2Q9Y2T7 364 aaKnown RBP20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 COL4A3BPQ9Y5P4 624 aa20.58■□□□□ 0.89
PRPF40B-216ENST00000552301 A0A087WWV3 80 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 DENND3A2RUS2 1198 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 PP2D1A8MPX8 630 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 USO1O60763 962 aaKnown RBP20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 UPP2O95045 317 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 ZRSR1Q15695 479 aaKnown RBP20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 IL17AQ16552 155 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 TMCO2Q7Z6W1 182 aaPredicted RBP20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 FAM228AQ86W67 206 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 CDK5RAP3Q96JB5 506 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 INO80BQ9C086 356 aaPredicted RBP20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 ZNF576Q9H609 170 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 ST3GAL5Q9UNP4 418 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 KIAA1024Q9UPX6 916 aa20.57■□□□□ 0.88
PRPF40B-216ENST00000552301 A0A087WZ62 844 aa20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 DARSP14868 501 aaKnown RBP20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 MYOGP15173 224 aa20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 SFPQP23246 707 aaKnown RBP eCLIP20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 MCPH1Q8NEM0 835 aa20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 RAD9AQ99638 391 aa20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 FDXACB1Q9BRP7 624 aaPredicted RBP20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 DDX19AQ9NUU7 478 aaKnown RBP20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 PTPRSQ13332 1948 aa20.56■□□□□ 0.88
PRPF40B-216ENST00000552301 ENPP3O14638 875 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 ASAP2O43150 1006 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 CA3P07451 260 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 IBSPP21815 317 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 CDC25AP30304 524 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 TFDP1Q14186 410 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 MXD4Q14582 209 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 FOXD4L5Q5VV16 416 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 FAM173BQ6P4H8 233 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 RASSF8Q8NHQ8 419 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 PRPF31Q8WWY3 499 aaKnown RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 FOXD4L4Q8WXT5 416 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 TOP1MTQ969P6 601 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 AK8Q96MA6 479 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 YME1L1Q96TA2 773 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 TSPYL2Q9H2G4 693 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 TTYH1Q9H313 450 aaPredicted RBP20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 SEMA6BQ9H3T3 888 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 XPNPEP1Q9NQW7 623 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 DNM3Q9UQ16 869 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 INSL6Q9Y581 213 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 CLIC4Q9Y696 253 aa20.55■□□□□ 0.88
PRPF40B-216ENST00000552301 SRGAP2CP0DJJ0 459 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 ZSCAN20P17040 1043 aaPredicted RBP20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 UBA7P41226 1012 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 CEBPZQ03701 1054 aaKnown RBP20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 LAMTOR4Q0VGL1 99 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 PADI6Q6TGC4 694 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 KSR1Q8IVT5 923 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 LINC01599Q8WXQ3 324 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 ZNF396Q96N95 335 aaPredicted RBP20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 ADAM2Q99965 735 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 NT5C3AQ9H0P0 336 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 POLR3FQ9H1D9 316 aaPredicted RBP20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 BHMT2Q9H2M3 363 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 TMX1Q9H3N1 280 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 C1orf112Q9NSG2 853 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 RNF216Q9NWF9 866 aaPredicted RBP20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 LRFN2Q9ULH4 789 aa20.54■□□□□ 0.88
PRPF40B-216ENST00000552301 MYO9BQ13459 2157 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 STAG3L1P0CL83 205 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 ZSCAN22P10073 491 aaPredicted RBP20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 LONP1P36776 959 aaKnown RBP20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 PHKA2P46019 1235 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 ECM1Q16610 540 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 MAEAQ7L5Y9 396 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 CATSPER4Q7RTX7 472 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 CABP7Q86V35 215 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 RNF149Q8NC42 400 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 MTMR10Q9NXD2 777 aa20.53■□□□□ 0.88
PRPF40B-216ENST00000552301 FAM102BQ5T8I3 360 aa20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 SRGAP1Q7Z6B7 1085 aa20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 NPAS4Q8IUM7 802 aa20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 CALML4Q96GE6 196 aa20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 USP28Q96RU2 1077 aa20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 MMTAG2Q9BU76 263 aaKnown RBP20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 TTC3P53804 2025 aa20.52■□□□□ 0.88
PRPF40B-216ENST00000552301 SLC26A4O43511 780 aa20.51■□□□□ 0.87
PRPF40B-216ENST00000552301 MGEA5O60502 916 aa20.51■□□□□ 0.87
PRPF40B-216ENST00000552301 CSDE1O75534 798 aaKnown RBP20.51■□□□□ 0.87
PRPF40B-216ENST00000552301 EYA4O95677 639 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms