RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 TRIOBPQ9H2D6 2365 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 A0A1W2PPC1 479 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 MEIS3P2A8K0S8 358 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 SGSM2O43147 1006 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 CNOT4O95628 575 aaKnown RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 SERPINB2P05120 415 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 ADH4P08319 380 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 FBLP22087 321 aaKnown RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 AMPHP49418 695 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 MLLT6P55198 1093 aaPredicted RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 CLCQ05315 142 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 CCDC142Q17RM4 750 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 ANKRD39Q53RE8 183 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 CCDC93Q567U6 631 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 TDRD10Q5VZ19 366 aaKnown RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 DCAF15Q66K64 600 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 INTS3Q68E01 1043 aaKnown RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 FBXO46Q6PJ61 603 aaPredicted RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 PCSK4Q6UW60 755 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 HDGFL2Q7Z4V5 671 aaPredicted RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 FAM126BQ8IXS8 530 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 IFNL2Q8IZJ0 200 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 ZCCHC14Q8WYQ9 949 aaKnown RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 LTV1Q96GA3 475 aaPredicted RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 COG3Q96JB2 828 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 DHRS1Q96LJ7 313 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 ZSWIM3Q96MP5 696 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 SLC9A7Q96T83 725 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 PSMD1Q99460 953 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 AP5M1Q9H0R1 490 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 SEC61A2Q9H9S3 476 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 NGRNQ9NPE2 291 aaKnown RBP3.21□□□□□ -1.9
PTCH1-223ENST00000551623 ZDHHC9Q9Y397 364 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 COL6A3P12111 3177 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 COL15A1P39059 1388 aa3.21□□□□□ -1.9
PTCH1-223ENST00000551623 TRPM7Q96QT4 1865 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 CASP8AP2Q9UKL3 1982 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 TRAF5O00463 557 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 U2SURPO15042 1029 aaKnown RBP3.2□□□□□ -1.9
PTCH1-223ENST00000551623 SORBS3O60504 671 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 FUCA1P04066 466 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 HSP90AB1P08238 724 aaKnown RBP3.2□□□□□ -1.9
PTCH1-223ENST00000551623 C1SP09871 688 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 STAT5AP42229 794 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 LRRFIP1Q32MZ4 808 aaKnown RBP3.2□□□□□ -1.9
PTCH1-223ENST00000551623 HSP90AB2PQ58FF8 381 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 PRR5LQ6MZQ0 368 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 GLCCI1Q86VQ1 547 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 RTKN2Q8IZC4 609 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 LARP4BQ92615 738 aaKnown RBP3.2□□□□□ -1.9
PTCH1-223ENST00000551623 ZDHHC15Q96MV8 337 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 NOL6Q9H6R4 1146 aaKnown RBP3.2□□□□□ -1.9
PTCH1-223ENST00000551623 BARX1Q9HBU1 254 aaPredicted RBP3.2□□□□□ -1.9
PTCH1-223ENST00000551623 RNF186Q9NXI6 227 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 UBP1Q9NZI7 540 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 FTSJ1Q9UET6 329 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 VTI1BQ9UEU0 232 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 RAB3GAP2Q9H2M9 1393 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 CCDC88AQ3V6T2 1871 aa3.2□□□□□ -1.9
PTCH1-223ENST00000551623 WASHC2AQ641Q2 1341 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 RIC1Q4ADV7 1423 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 FAM86C2PA6NEL3 165 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 AURKAO14965 403 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 FYB1O15117 783 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CYP7B1O75881 506 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CELF2O95319 508 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CYP19A1P11511 503 aaPredicted RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CD247P20963 164 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 COMTP21964 271 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 IARSP41252 1262 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 EPS15P42566 896 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 PMS1P54277 932 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 EIF5P55010 431 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 NKX3-2P78367 333 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 MRPL58Q14197 206 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CR1LQ2VPA4 569 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 AGBL4Q5VU57 503 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 RGMBQ6NW40 437 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 GK5Q6ZS86 529 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 BHLHA9Q7RTU4 235 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 PPFIBP1Q86W92 1011 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CPNE8Q86YQ8 564 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 C1orf210Q8IVY1 113 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CACTINQ8WUQ7 758 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF296Q8WUU4 475 aaPredicted RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 ARMC5Q96C12 935 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 MASTLQ96GX5 879 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CLIC6Q96NY7 704 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 PLEKHG4BQ96PX9 1271 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 LMF1Q96S06 567 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 MCMBPQ9BTE3 642 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 VPS33BQ9H267 617 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 SLC12A5Q9H2X9 1139 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 ADARB2Q9NS39 739 aaKnown RBP3.19□□□□□ -1.9
PTCH1-223ENST00000551623 GPRC5DQ9NZD1 345 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 ADAM29Q9UKF5 820 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 CROTQ9UKG9 612 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 SCN11AQ9UI33 1791 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 SLX4Q8IY92 1834 aa3.19□□□□□ -1.9
PTCH1-223ENST00000551623 TTC28Q96AY4 2481 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms