RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RSBN1LQ6PCB5 846 aaPredicted RBP17.55■□□□□ 0.4
CUX1-213ENST00000549414 CROCCP2Q86T23 111 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 PALM2Q8IXS6 379 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 MICALL2Q8IY33 904 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 HAUS1Q96CS2 278 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 FMO2Q99518 471 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 LRRC1Q9BTT6 524 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 NOVA2Q9UNW9 492 aaKnown RBP17.55■□□□□ 0.4
CUX1-213ENST00000549414 CCDC13Q8IYE1 715 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 C7orf31Q8N865 590 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 GRK7Q8WTQ7 553 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 WDR70Q9NW82 654 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 TBK1Q9UHD2 729 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 ECEL1O95672 775 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 UCHL3P15374 230 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 ALCAMQ13740 583 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 STXBP2Q15833 593 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 C6orf163Q5TEZ5 329 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 HOMER3Q9NSC5 361 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 LRRD1A4D1F6 860 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 DNAJC24Q6P3W2 148 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 MCPH1Q8NEM0 835 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 FAM151AQ8WW52 585 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 OTUD5Q96G74 571 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 SEL1LQ9UBV2 794 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 CAPN7Q9Y6W3 813 aa17.55■□□□□ 0.4
CUX1-213ENST00000549414 RGPD8O14715 1765 aaPredicted RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 SGK1O00141 431 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 MED24O75448 989 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 PSMC5P62195 406 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 IFRD2Q12894 506 aaPredicted RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 TFDP1Q14186 410 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 PLA2G4FQ68DD2 849 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 TTI2Q6NXR4 508 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 SAMD7Q7Z3H4 446 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 ELOA2Q8IYF1 753 aaPredicted RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 CACNA2D3Q8IZS8 1091 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 ANKRD7Q92527 254 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 EXOC4Q96A65 974 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 C11orf70Q9BRQ4 267 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 ATP6V0A4Q9HBG4 840 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 SNX12Q9UMY4 172 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 CTIFO43310 598 aaKnown RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 GTF2A1P52655 376 aaPredicted RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 EMBQ6PCB8 327 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 FRMD5Q7Z6J6 570 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 RNF10Q8N5U6 811 aaKnown RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 DDR1Q08345 913 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 PDCLQ13371 301 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 ZKSCAN8Q15776 578 aaPredicted RBP17.54■□□□□ 0.4
CUX1-213ENST00000549414 TMEM270Q6UE05 265 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 ANKRD36BP1Q96IX9 119 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 CALN1Q9BXU9 219 aa17.54■□□□□ 0.4
CUX1-213ENST00000549414 KRT1P04264 644 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 RPA1P27694 616 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 YWHABP31946 246 aaKnown RBP17.53■□□□□ 0.4
CUX1-213ENST00000549414 NPEPPSP55786 919 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 GJB7Q6PEY0 223 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 CEP128Q6ZU80 1094 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 FAM49AQ9H0Q0 323 aaPredicted RBP17.53■□□□□ 0.4
CUX1-213ENST00000549414 EHD2Q9NZN4 543 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 CNOT7Q9UIV1 285 aaKnown RBP17.53■□□□□ 0.4
CUX1-213ENST00000549414 H7C0C1 242 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 CLDN3O15551 220 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 CYP11B2P19099 503 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 BMP6P22004 513 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 SMARCA1P28370 1054 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 ATP5OP48047 213 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 SEMA3FQ13275 785 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 RHOT2Q8IXI1 618 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 FAM149B1Q96BN6 582 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 NACA2Q9H009 215 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 MSH4O15457 936 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 DPEP1P16444 411 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 ZNF18P17022 549 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 ZFPM1Q8IX07 1006 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 APBA1Q02410 837 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 IFT88Q13099 833 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 SMC6Q96SB8 1091 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 HOXC10Q9NYD6 342 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 ADAM22Q9P0K1 906 aa17.53■□□□□ 0.4
CUX1-213ENST00000549414 MORC2Q9Y6X9 1032 aaPredicted RBP17.53■□□□□ 0.4
CUX1-213ENST00000549414 FOXP2O15409 715 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 ACSL3O95573 720 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 HNRNPH2P55795 449 aaKnown RBP17.52■□□□□ 0.4
CUX1-213ENST00000549414 SLC18A3Q16572 532 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 NLRP7Q8WX94 980 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 SREK1Q8WXA9 508 aaKnown RBP17.52■□□□□ 0.4
CUX1-213ENST00000549414 NUDT12Q9BQG2 462 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 SEMA6BQ9H3T3 888 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 INTS9Q9NV88 658 aaKnown RBP17.52■□□□□ 0.4
CUX1-213ENST00000549414 PCDHA10Q9Y5I2 948 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 WNT7AO00755 349 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 IL1R1P14778 569 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 ARHGAP25P42331 645 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 SNX16P57768 344 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 GKAP1Q5VSY0 366 aaPredicted RBP17.52■□□□□ 0.4
CUX1-213ENST00000549414 CDKAL1Q5VV42 579 aa17.52■□□□□ 0.4
CUX1-213ENST00000549414 RIN2Q8WYP3 895 aaPredicted RBP17.52■□□□□ 0.4
CUX1-213ENST00000549414 PLAAQ9Y263 795 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms