RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 TSGA10Q9BZW7 698 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 SIK3Q9Y2K2 1263 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 PHIPQ8WWQ0 1821 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 GRIN2DO15399 1336 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 ZNF233A6NK53 670 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 E7EVH7 732 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 OPA1O60313 960 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 KIAA0754O94854 1291 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 NR2F2P24468 414 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 SSTR3P32745 418 aaPredicted RBP12.09□□□□□ -0.47
LINC00661-204ENST00000549354 CASP4P49662 377 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 EPHB4P54760 987 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 CFAP221Q4G0U5 840 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 SCYL3Q8IZE3 742 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 MYOCDQ8IZQ8 938 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 ERGIC2Q96RQ1 377 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 TSG101Q99816 390 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 FBXO28Q9NVF7 368 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 MAP3K20Q9NYL2 800 aaKnown RBP12.09□□□□□ -0.47
LINC00661-204ENST00000549354 GGT7Q9UJ14 662 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 PNMA2Q9UL42 364 aa12.09□□□□□ -0.47
LINC00661-204ENST00000549354 CFBP00751 764 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 TCP1P17987 556 aaKnown RBP12.08□□□□□ -0.48
LINC00661-204ENST00000549354 PSMD2Q13200 908 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 CTTNQ14247 550 aaKnown RBP12.08□□□□□ -0.48
LINC00661-204ENST00000549354 ZNF746Q6NUN9 644 aaPredicted RBP12.08□□□□□ -0.48
LINC00661-204ENST00000549354 CCDC174Q6PII3 467 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 TPH2Q8IWU9 490 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 C12orf42Q96LP6 360 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 ACP6Q9NPH0 428 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 EMILIN3Q9NT22 766 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 VAV3Q9UKW4 847 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 RPTORQ8N122 1335 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 PITPNM2Q9BZ72 1349 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 MSH4O15457 936 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 GCNT3O95395 438 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 FDX1P10109 184 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 TMOD1P28289 359 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 ZC2HC1CQ53FD0 456 aaPredicted RBP12.08□□□□□ -0.48
LINC00661-204ENST00000549354 NOL9Q5SY16 702 aaKnown RBP12.08□□□□□ -0.48
LINC00661-204ENST00000549354 MMGT1Q8N4V1 131 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 RETREG2Q8NC44 543 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 TRPM4Q8TD43 1214 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 CLEC4DQ8WXI8 215 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 PCIF1Q9H4Z3 704 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 SLC38A10Q9HBR0 1119 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 SPON1Q9HCB6 807 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 HOMER2Q9NSB8 354 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 RABGAP1Q9Y3P9 1069 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 SSC5DA1L4H1 1573 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 TLR2O60603 784 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 GFPT2O94808 682 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 CALCAP01258 141 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 SLCO1A2P46721 670 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 COASYQ13057 564 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 MAN2A1Q16706 1144 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 SFMBT2Q5VUG0 894 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 CCDC25Q86WR0 208 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 U2AF1L4Q8WU68 220 aaKnown RBP12.08□□□□□ -0.48
LINC00661-204ENST00000549354 DNAJC19Q96DA6 116 aa12.08□□□□□ -0.48
LINC00661-204ENST00000549354 FRMPD4Q14CM0 1322 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 HIRAP54198 1017 aaPredicted RBP12.07□□□□□ -0.48
LINC00661-204ENST00000549354 KCNMA1Q12791 1236 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 ANGEL2Q5VTE6 544 aaKnown RBP12.07□□□□□ -0.48
LINC00661-204ENST00000549354 AADACL2Q6P093 401 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 CASKIN2Q8WXE0 1202 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 TAF4BQ92750 862 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 PURBQ96QR8 312 aaKnown RBP12.07□□□□□ -0.48
LINC00661-204ENST00000549354 BHMT2Q9H2M3 363 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 EHMT1Q9H9B1 1298 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 MLXIPLQ9NP71 852 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 RLFQ13129 1914 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 RAD51CO43502 376 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 TRIM49P0CI25 452 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 TRIM49CP0CI26 452 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 RPA1P27694 616 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 HNRNPH1P31943 449 aaKnown RBP12.07□□□□□ -0.48
LINC00661-204ENST00000549354 BAP1Q92560 729 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 SLC5A5Q92911 643 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 MRRFQ96E11 262 aaKnown RBP12.07□□□□□ -0.48
LINC00661-204ENST00000549354 POLR3CQ9BUI4 534 aaPredicted RBP12.07□□□□□ -0.48
LINC00661-204ENST00000549354 PPP1R9AQ9ULJ8 1098 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 PLAAQ9Y263 795 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 PAPPA2Q9BXP8 1791 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 LAMA3Q16787 3333 aa12.07□□□□□ -0.48
LINC00661-204ENST00000549354 RBBP6Q7Z6E9 1792 aaKnown RBP12.06□□□□□ -0.48
LINC00661-204ENST00000549354 GOLGA8KD6RF30 607 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 ECM2O94769 699 aaPredicted RBP12.06□□□□□ -0.48
LINC00661-204ENST00000549354 SPATA31C1P0DKV0 1188 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 ITGA4P13612 1032 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 PTPRAP18433 802 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 SLC9C1Q4G0N8 1177 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 C2CD6Q53TS8 623 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 CENPPQ6IPU0 288 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 IFT20Q8IY31 132 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 MSL3Q8N5Y2 521 aaKnown RBP12.06□□□□□ -0.48
LINC00661-204ENST00000549354 JPH2Q9BR39 696 aaPredicted RBP12.06□□□□□ -0.48
LINC00661-204ENST00000549354 AMACRQ9UHK6 382 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 MYBP10242 640 aa12.06□□□□□ -0.48
LINC00661-204ENST00000549354 VCAM1P19320 739 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms