RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 GAS7O60861 476 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 GJB2P29033 226 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 SLC26A2P50443 739 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 SIGLEC14Q08ET2 396 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 MARCH8Q5T0T0 291 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 LRCH2Q5VUJ6 765 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 CMTR2Q8IYT2 770 aaKnown RBP17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 KLHL23Q8NBE8 558 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 PPP2R3CQ969Q6 453 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 FAM20AQ96MK3 541 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 TEKT3Q9BXF9 490 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 KCNMB3Q9NPA1 279 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 SMC3Q9UQE7 1217 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 USP15Q9Y4E8 981 aaPredicted RBP17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 EVPLQ92817 2033 aa17.7■□□□□ 0.42
CHMP1A-206ENST00000549139 PSAPP07602 524 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 SFNP31947 248 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 VCPP55072 806 aaKnown RBP17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 FAM160B1Q5W0V3 765 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 SWSAP1Q6NVH7 229 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 B3GNT9Q6UX72 402 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 TSHZ1Q6ZSZ6 1077 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 PHF7Q9BWX1 381 aaPredicted RBP17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 ZNF302Q9NR11 478 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 FAM86C1Q9NVL1 165 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 BARX2Q9UMQ3 279 aaPredicted RBP17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 CACNA1AO00555 2505 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 PLXNA4Q9HCM2 1894 aa17.69■□□□□ 0.42
CHMP1A-206ENST00000549139 LOXHD1Q8IVV2 1947 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 VPS13AQ96RL7 3174 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 WDR64B1ANS9 1081 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 GFRA3O60609 400 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 U2AF2P26368 475 aaKnown RBP eCLIP17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 MARK3P27448 753 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 NRIP1P48552 1158 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 PLXNA3P51805 1871 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 CCDC60Q8IWA6 550 aaPredicted RBP17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 RDM1Q8NG50 284 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 POF1BQ8WVV4 589 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 DNAJB3Q8WWF6 145 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 SUSD6Q92537 303 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 GJA10Q969M2 543 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 SNX21Q969T3 373 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 DISC1Q9NRI5 854 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 TUBE1Q9UJT0 475 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 SAMM50Q9Y512 469 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 PCDHGC5Q9Y5F6 944 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 MAFBQ9Y5Q3 323 aaPredicted RBP17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 CDY2AQ9Y6F7 541 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 WDR87Q6ZQQ6 2873 aa17.68■□□□□ 0.42
CHMP1A-206ENST00000549139 MYO10Q9HD67 2058 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 DCHS1Q96JQ0 3298 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 RRN3P2A6NIE6 340 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 BACH1O14867 736 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 BAG4O95429 457 aaKnown RBP17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 CD52P31358 61 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 JAK3P52333 1124 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 PPFIA1Q13136 1202 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 GNL2Q13823 731 aaKnown RBP17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 PLCB4Q15147 1175 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 GRIK4Q16099 956 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 RBM23Q86U06 439 aaKnown RBP17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 RSPH3Q86UC2 560 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 NPAS4Q8IUM7 802 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 SLFN12Q8IYM2 578 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 VN1R2Q8NFZ6 395 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 ATP8B4Q8TF62 1192 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 HAS1Q92839 578 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 UNC45AQ9H3U1 944 aa17.67■□□□□ 0.42
CHMP1A-206ENST00000549139 K7ELQ4 463 aaPredicted RBP17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 MARCH6O60337 910 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 HBP1O60381 514 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 INSRRP14616 1297 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 ATF7P17544 494 aaPredicted RBP17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 AVPR2P30518 371 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 MRPS6P82932 125 aaKnown RBP17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 RBM10P98175 930 aaKnown RBP17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 PDXDC2PQ6P474 469 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 MIER3Q7Z3K6 550 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 POTEDQ86YR6 584 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 NOSTRINQ8IVI9 506 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 INTS4Q96HW7 963 aaKnown RBP17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 RPGRIP1Q96KN7 1286 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 FTHL17Q9BXU8 183 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 SQORQ9Y6N5 450 aa17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 EP300Q09472 2414 aaPredicted RBP17.66■□□□□ 0.42
CHMP1A-206ENST00000549139 ATP4AP20648 1035 aa17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 TRAPPC10P48553 1259 aa17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 PPP2R5CQ13362 524 aa17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 LARP1BQ659C4 914 aaKnown RBP17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 BBXQ8WY36 941 aaPredicted RBP17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 ZBTB10Q96DT7 871 aa17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 GABBR1Q9UBS5 961 aa17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 TRPC6Q9Y210 931 aa17.65■□□□□ 0.42
CHMP1A-206ENST00000549139 H3BQV1 296 aa17.64■□□□□ 0.41
CHMP1A-206ENST00000549139 WNT7AO00755 349 aa17.64■□□□□ 0.41
CHMP1A-206ENST00000549139 CHMP2AO43633 222 aa17.64■□□□□ 0.41
CHMP1A-206ENST00000549139 GATMP50440 423 aa17.64■□□□□ 0.41
CHMP1A-206ENST00000549139 ORC2Q13416 577 aaPredicted RBP17.64■□□□□ 0.41
CHMP1A-206ENST00000549139 PAN2Q504Q3 1202 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms