RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SESTD1Q86VW0 696 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 RPAP2Q8IXW5 612 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ADSSL1Q8N142 457 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 TMEM57Q8N5G2 664 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 GMCL1P1Q8NEA9 526 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 AFG1LQ8WV93 481 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 STAG1Q8WVM7 1258 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 FRAT1Q92837 279 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 MKL1Q969V6 931 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 MSLNLQ96KJ4 702 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ALG1Q9BT22 464 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ZCCHC2Q9C0B9 1178 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 PUS7LQ9H0K6 701 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 IRF2BPLQ9H1B7 796 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ZSWIM4Q9H7M6 989 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 BRD7Q9NPI1 651 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 INCENPQ9NQS7 918 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ARPP21Q9UBL0 812 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ADD3Q9UEY8 706 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 GTF2IRD1Q9UHL9 959 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 CCPG1Q9ULG6 757 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 PRR12Q9ULL5 1215 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 KIAA1217Q5T5P2 1943 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 CACNA1GO43497 2377 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 NKRFO15226 690 aaKnown RBP eCLIP7.66□□□□□ -1.18
LIMA1-204ENST00000549064 EYA4O95677 639 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 TTLL1O95922 423 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 MMP3P08254 477 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CT47B1P0C2W7 299 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-204ENST00000549064 LINC00271P0C7V0 271 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 MCCP23508 829 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CALML3P27482 149 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 GSTT1P30711 240 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 SLC1A4P43007 532 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 PDE4BQ07343 736 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 ADAM15Q13444 863 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CBX2Q14781 532 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CHST3Q7LGC8 479 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 KRT25Q7Z3Z0 450 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 ADGRD2Q7Z7M1 963 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 FAM160B2Q86V87 743 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 SCFD2Q8WU76 684 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CHURC1Q8WUH1 139 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 TOP1MTQ969P6 601 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 RPGRIP1Q96KN7 1286 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 TRIM56Q9BRZ2 755 aaKnown RBP7.66□□□□□ -1.18
LIMA1-204ENST00000549064 PAG1Q9NWQ8 432 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CLEC1BQ9P126 229 aa7.66□□□□□ -1.18
LIMA1-204ENST00000549064 CFAP47Q6ZTR5 3102 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 A0A1W2PP55 124 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 ANP32CO43423 234 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 SASH3O75995 380 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 ZNF286BP0CG31 522 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 CAMK1Q14012 370 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 SBK1Q52WX2 424 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 PLEKHG4Q58EX7 1191 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 KIAA0319Q5VV43 1072 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 ZNF444Q8N0Y2 327 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 C7orf31Q8N865 590 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 TMEM105Q8N8V8 129 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 SMRP1Q8NCR6 262 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 C3orf58Q8NDZ4 430 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 GLIS3Q8NEA6 775 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 NKD2Q969F2 451 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 RMDN1Q96DB5 314 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 CNTNAP3BQ96NU0 1288 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 SPON2Q9BUD6 331 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 IFIH1Q9BYX4 1025 aaKnown RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 CNTNAP3Q9BZ76 1288 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 LMAN2LQ9H0V9 348 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 BOLA2Q9H3K6 86 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 EPG5Q9HCE0 2579 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 PLXNA4Q9HCM2 1894 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 MYO10Q9HD67 2058 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 KMT2BQ9UMN6 2715 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 BARX2Q9UMQ3 279 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 TMA7Q9Y2S6 64 aaKnown RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 USP15Q9Y4E8 981 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-204ENST00000549064 NCOR2Q9Y618 2525 aa7.65□□□□□ -1.18
LIMA1-204ENST00000549064 PLIN4Q96Q06 1357 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 ANKRD62A6NC57 917 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 TTLL8A6PVC2 850 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 GSG1L2A8MUP6 293 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 RSPH10B2B2RC85 870 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 C5orf67F2Z3F1 127 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 FBXO24O75426 580 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 GLP2RO95838 553 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 ICAM1P05362 532 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 RSPH10BP0C881 870 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 SP100P23497 879 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 EDNRBP24530 442 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 SLC16A2P36021 539 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 BMPR1AP36894 532 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 THPOP40225 353 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 RBM10P98175 930 aaKnown RBP7.64□□□□□ -1.19
LIMA1-204ENST00000549064 ARHGAP1Q07960 439 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 UBE3CQ15386 1083 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 PTPN21Q16825 1174 aa7.64□□□□□ -1.19
LIMA1-204ENST00000549064 LY6KQ17RY6 165 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms