RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 GCLMP48507 274 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 ZNF131P52739 623 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 SEPT14Q6ZU15 432 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 CEP112Q8N8E3 955 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 BSNDQ8WZ55 320 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 CCDC127Q96BQ5 260 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 FHDC1Q9C0D6 1143 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 FAM184BQ9ULE4 1060 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 POLR3GO15318 223 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 USP2O75604 605 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 CDK17Q00537 523 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 GBP6Q6ZN66 633 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 CYFIP1Q7L576 1253 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 IRF2BP2Q7Z5L9 587 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 NLRX1Q86UT6 975 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 OTUD5Q96G74 571 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 BORCS6Q96GS4 357 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 ELP3Q9H9T3 547 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 SEPT11Q9NVA2 429 aaKnown RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 TMOD4Q9NZQ9 345 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 OGFRQ9NZT2 677 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 MYO1AQ9UBC5 1043 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 HYOU1Q9Y4L1 999 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 BRCA1P38398 1863 aaKnown RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 RBBP6Q7Z6E9 1792 aaKnown RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 PALMO75781 387 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 TBC1D8O95759 1140 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 GYS2P54840 703 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 GADL1Q6ZQY3 521 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 HAUS6Q7Z4H7 955 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 VSIG10LQ86VR7 867 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 PROCA1Q8NCQ7 364 aaPredicted RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 HDAC7Q8WUI4 952 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 KAT5Q92993 513 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 AS3MTQ9HBK9 375 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 ABCB6Q9NP58 842 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 ARGLU1Q9NWB6 273 aaPredicted RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 CYP39A1Q9NYL5 469 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 RNF181Q9P0P0 153 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 ZNF112Q9UJU3 913 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 FRMD4BQ9Y2L6 1034 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 DOCK5Q9H7D0 1870 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 ANKRD63C9JTQ0 380 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 CALCAP01258 141 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 BCRP11274 1271 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 GUCY2CP25092 1073 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 FMO5P49326 533 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 SLC7A5Q01650 507 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 APOBEC3FQ8IUX4 373 aaKnown RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 CCDC60Q8IWA6 550 aaPredicted RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 PLEKHO2Q8TD55 490 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 CEP170P1Q96L14 293 aa12.11□□□□□ -0.47
CUX1-212ENST00000547394 TOPORSQ9NS56 1045 aaPredicted RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 ZHX1Q9UKY1 873 aaPredicted RBP12.11□□□□□ -0.47
CUX1-212ENST00000547394 MYH11P35749 1972 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 SLC26A4O43511 780 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 TACC1O75410 805 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 ZRANB2O95218 330 aaKnown RBP eCLIP12.1□□□□□ -0.47
CUX1-212ENST00000547394 PLA2G4AP47712 749 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 PPP3CAQ08209 521 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 WHAMMP3Q1A5X7 153 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 CATSPERGQ6ZRH7 1159 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 PALB2Q86YC2 1186 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 CBWD2Q8IUF1 395 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 SEPT9Q9UHD8 586 aaPredicted RBP12.1□□□□□ -0.47
CUX1-212ENST00000547394 AFG3L2Q9Y4W6 797 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 STK24Q9Y6E0 443 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 SNCAIPQ9Y6H5 919 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 EMSYQ7Z589 1322 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 WDR64B1ANS9 1081 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 EIF3DO15371 548 aaKnown RBP eCLIP12.1□□□□□ -0.47
CUX1-212ENST00000547394 CCND2P30279 289 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 USP8P40818 1118 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 TTLL12Q14166 644 aaPredicted RBP12.1□□□□□ -0.47
CUX1-212ENST00000547394 SLC18A3Q16572 532 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 LONRF2Q1L5Z9 754 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 PAPD7Q5XG87 772 aaKnown RBP12.1□□□□□ -0.47
CUX1-212ENST00000547394 ANKRD35Q8N283 1001 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 ZNF668Q96K58 619 aaPredicted RBP12.1□□□□□ -0.47
CUX1-212ENST00000547394 TEX13BQ9BXU2 312 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 TBC1D22BQ9NU19 505 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 BTBD7Q9P203 1132 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 LARSQ9P2J5 1176 aaKnown RBP12.1□□□□□ -0.47
CUX1-212ENST00000547394 ODF2LQ9ULJ1 636 aa12.1□□□□□ -0.47
CUX1-212ENST00000547394 COL11A1P12107 1806 aaPredicted RBP12.1□□□□□ -0.47
CUX1-212ENST00000547394 IRF6O14896 467 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 PPP1R37O75864 691 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 LMNB1P20700 586 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 ABCB4P21439 1286 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 NOP2P46087 812 aaKnown RBP12.09□□□□□ -0.47
CUX1-212ENST00000547394 PSMC5P62195 406 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 MTERF2Q49AM1 385 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 WDR78Q5VTH9 848 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 LMBRD2Q68DH5 695 aaPredicted RBP12.09□□□□□ -0.47
CUX1-212ENST00000547394 GLYCTKQ8IVS8 523 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.09□□□□□ -0.476e-12■■■■■ 36.6
CUX1-212ENST00000547394 U2AF1L4Q8WU68 220 aaKnown RBP12.09□□□□□ -0.47
CUX1-212ENST00000547394 ARFGAP3Q9NP61 516 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 DNAJC12Q9UKB3 198 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms