RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 COL20A1Q9P218 1284 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 FBXO40Q9UH90 709 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 DDX25Q9UHL0 483 aaKnown RBP9.47□□□□□ -0.89
VPS29-203ENST00000546588 RIPK3Q9Y572 518 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 PFASO15067 1338 aa9.47□□□□□ -0.89
VPS29-203ENST00000546588 A0A087X0B3 334 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 SYCE3A1L190 88 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 VWA3AA6NCI4 1184 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 CELF2O95319 508 aaKnown RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 SLC25A27O95847 323 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 SLFN14P0C7P3 912 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 CETPP11597 493 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 EDNRBP24530 442 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 STAT3P40763 770 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 SARSP49591 514 aaKnown RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 POU4F2Q12837 409 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 PRKG1Q13976 671 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 CALCRLQ16602 461 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 SNRNP48Q6IEG0 339 aaKnown RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 CNNM4Q6P4Q7 775 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 USP49Q70CQ1 688 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 GAS2L3Q86XJ1 694 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 DNERQ8NFT8 737 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 SYTL5Q8TDW5 730 aaPredicted RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 TBC1D5Q92609 795 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 HSH2DQ96JZ2 352 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 TRERF1Q96PN7 1200 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 MMTAG2Q9BU76 263 aaKnown RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 RAB34Q9BZG1 259 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 SPATC1LQ9H0A9 340 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 TNMDQ9H2S6 317 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 CCSER2Q9H7U1 834 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 RAVER2Q9HCJ3 691 aaKnown RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 A1CFQ9NQ94 594 aaKnown RBP9.46□□□□□ -0.9
VPS29-203ENST00000546588 RNF146Q9NTX7 359 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 CYP39A1Q9NYL5 469 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 BTBD7Q9P203 1132 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 MORF4L1Q9UBU8 362 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 USP20Q9Y2K6 914 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 UBIAD1Q9Y5Z9 338 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 ZSWIM8A7E2V4 1837 aa9.46□□□□□ -0.9
VPS29-203ENST00000546588 RRP9O43818 475 aaKnown RBP9.45□□□□□ -0.9
VPS29-203ENST00000546588 PSMD10O75832 226 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 CFBP00751 764 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 ALAS1P13196 640 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 TAL1P17542 331 aaPredicted RBP9.45□□□□□ -0.9
VPS29-203ENST00000546588 HOXA13P31271 388 aaPredicted RBP9.45□□□□□ -0.9
VPS29-203ENST00000546588 RPS6P62753 249 aaKnown RBP9.45□□□□□ -0.9
VPS29-203ENST00000546588 FANCCQ00597 558 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 PPP2R5CQ13362 524 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 PGM5Q15124 567 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 HIF1AQ16665 826 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 CEP55Q53EZ4 464 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 SLC30A10Q6XR72 485 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 RIPOR1Q6ZS17 1223 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 SAPCD2Q86UD0 394 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 RASAL3Q86YV0 1011 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 TRIML1Q8N9V2 468 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 MORC4Q8TE76 937 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 FBF1Q8TES7 1133 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 SLC5A5Q92911 643 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 EPSTI1Q96J88 318 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 INPP4AQ96PE3 977 aaPredicted RBP9.45□□□□□ -0.9
VPS29-203ENST00000546588 RIT2Q99578 217 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 PDCD2LQ9BRP1 358 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 CFHR5Q9BXR6 569 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 NEUROD4Q9HD90 331 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 PXMP2Q9NR77 195 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 KBTBD4Q9NVX7 518 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 RBPJLQ9UBG7 517 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 VAV3Q9UKW4 847 aa9.45□□□□□ -0.9
VPS29-203ENST00000546588 DNAJC25-GNG10A0A024R161 153 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 TGFBR3LH3BV60 316 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 MSH4O15457 936 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 OIP5O43482 229 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 RPLP1P05386 114 aaKnown RBP9.44□□□□□ -0.9
VPS29-203ENST00000546588 THBS1P07996 1170 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 GCLCP48506 637 aaPredicted RBP9.44□□□□□ -0.9
VPS29-203ENST00000546588 IDH3AP50213 366 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 MRPS9P82933 396 aaKnown RBP9.44□□□□□ -0.9
VPS29-203ENST00000546588 RAD51AP2Q09MP3 1159 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 TMEM266Q2M3C6 531 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 LONRF3Q496Y0 759 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 TMEM119Q4V9L6 283 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 CT47A1Q5JQC4 288 aaPredicted RBP9.44□□□□□ -0.9
VPS29-203ENST00000546588 RNF207Q6ZRF8 634 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 ABRAQ8N0Z2 381 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 FAM133AQ8N9E0 248 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 IQUBQ8NA54 791 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 BRI3BPQ8WY22 251 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 SUSD3Q96L08 255 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 IWS1Q96ST2 819 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 BPIFA3Q9BQP9 254 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 MXRA8Q9BRK3 442 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 TTC12Q9H892 705 aaPredicted RBP9.44□□□□□ -0.9
VPS29-203ENST00000546588 METTL5Q9NRN9 209 aaKnown RBP9.44□□□□□ -0.9
VPS29-203ENST00000546588 ASTN1O14525 1302 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 KDM3AQ9Y4C1 1321 aa9.44□□□□□ -0.9
VPS29-203ENST00000546588 DOCK3Q8IZD9 2030 aa9.43□□□□□ -0.9
VPS29-203ENST00000546588 FAM155AB1AL88 458 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms