RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CENPFP49454 3210 aa17.73■□□□□ 0.43
PRPF40A-212ENST00000545856 MROH7Q68CQ1 1323 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 A0A0U1RQG5 324 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 SMIM35A0A1B0GVV1 85 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 HIP1RO75146 1068 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 PLS3P13797 630 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 IDEP14735 1019 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 ARL2P36404 184 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 MAPK7Q13164 816 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 DMP1Q13316 513 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 STIM1Q13586 685 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 FAM26FQ5R3K3 315 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 DYMQ7RTS9 669 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 GRAMD1CQ8IYS0 662 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 NME8Q8N427 588 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 LINC01465Q8N7H1 131 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 U2AF1L4Q8WU68 220 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 LMBR1Q8WVP7 490 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 PSPC1Q8WXF1 523 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 STAMQ92783 540 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 MAP7D2Q96T17 732 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 TMEM106CQ9BVX2 250 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 NAT10Q9H0A0 1025 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 BLZF1Q9H2G9 400 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 XPNPEP1Q9NQW7 623 aa17.72■□□□□ 0.43
PRPF40A-212ENST00000545856 EIF3DO15371 548 aaKnown RBP eCLIP17.71■□□□□ 0.433e-7■■□□□ 14.3
PRPF40A-212ENST00000545856 CAND2O75155 1236 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 NAMPTP43490 491 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 NLRP12P59046 1061 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 COASYQ13057 564 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 TFDP1Q14186 410 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 KMT5BQ4FZB7 885 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 HERC4Q5GLZ8 1057 aaPredicted RBP17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 MTHFD1LQ6UB35 978 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 RPAINQ86UA6 219 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 SLC43A3Q8NBI5 491 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 NFKBIZQ9BYH8 718 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 MAN1B1Q9UKM7 699 aa17.71■□□□□ 0.43
PRPF40A-212ENST00000545856 A0A1W2PQ45 241 aaPredicted RBP17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 A0A1W2PQY0 241 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 SYCE3A1L190 88 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 TMEM150BA6NC51 233 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 KLRC1P26715 233 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 PCBP1Q15365 356 aaKnown RBP eCLIP17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 NBPF20Q3BBV1 942 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 FAM102BQ5T8I3 360 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 C1orf53Q5VUE5 145 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 LRSAM1Q6UWE0 723 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 FAM178BQ8IXR5 827 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 DAW1Q8N136 415 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 MCOLN1Q9GZU1 580 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 STARD7Q9NQZ5 370 aa17.7■□□□□ 0.42
PRPF40A-212ENST00000545856 EFNA5P52803 228 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 TYRO3Q06418 890 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 ITGA7Q13683 1181 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 BMT2Q1RMZ1 405 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 ODR4Q5SWX8 454 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 MARCH8Q5T0T0 291 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 EFCAB12Q6NXP0 572 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 RSPH3Q86UC2 560 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 ZNF410Q86VK4 478 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 GUF1Q8N442 669 aaKnown RBP17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 MYCT1Q8N699 235 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 FUCA2Q9BTY2 467 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 POLR3FQ9H1D9 316 aaPredicted RBP17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 C2orf40Q9H1Z8 148 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 HDAC6Q9UBN7 1215 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 PCDHB13Q9Y5F0 798 aa17.69■□□□□ 0.42
PRPF40A-212ENST00000545856 A0A087WWV3 80 aa17.68■□□□□ 0.42
PRPF40A-212ENST00000545856 NCKAP1LP55160 1127 aa17.68■□□□□ 0.42
PRPF40A-212ENST00000545856 SNRPFP62306 86 aaKnown RBP17.68■□□□□ 0.42
PRPF40A-212ENST00000545856 IFNLR1Q8IU57 520 aaPredicted RBP17.68■□□□□ 0.42
PRPF40A-212ENST00000545856 BPIFA3Q9BQP9 254 aa17.68■□□□□ 0.42
PRPF40A-212ENST00000545856 SETD4Q9NVD3 440 aa17.68■□□□□ 0.42
PRPF40A-212ENST00000545856 ARVCFO00192 962 aa17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 TFRCP02786 760 aaKnown RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 ERCC5P28715 1186 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 IRX5P78411 483 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 TRMT1LQ7Z2T5 733 aaKnown RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 SERINC5Q86VE9 423 aa17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 SFR1Q86XK3 245 aa17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 DHTKD1Q96HY7 919 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 MRPL44Q9H9J2 332 aaKnown RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 CGNQ9P2M7 1197 aaKnown RBP17.67■□□□□ 0.42
PRPF40A-212ENST00000545856 NPHP3-ACAD11A0A0J9YXS1 232 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 PSMA7O14818 248 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 MYCNP04198 464 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 CYP2C9P11712 490 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 CASP1P29466 404 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 IGBP1P78318 339 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 GTF2BQ00403 316 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 PTK7Q13308 1070 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 HSP90AA2PQ14568 343 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 CDCA2Q69YH5 1023 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 PPP4R3CPQ6ZMV5 832 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 EPM2AIP1Q7L775 607 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ZNF720Q7Z2F6 126 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 ZBTB8OSQ8IWT0 167 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 MYOCDQ8IZQ8 938 aa17.66■□□□□ 0.42
PRPF40A-212ENST00000545856 GOLGA5Q8TBA6 731 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms