RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 FMO5P49326 533 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 CUL1Q13616 776 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 KIAA1755Q5JYT7 1200 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 C1orf186Q6ZWK4 172 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 SLC30A5Q8TAD4 765 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 ZNF473Q8WTR7 871 aaKnown RBP17.18■□□□□ 0.34
LDLR-204ENST00000545707 LMBR1Q8WVP7 490 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 HES6Q96HZ4 224 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 CCT8L2Q96SF2 557 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.18■□□□□ 0.342e-6■■■■■ 72.5
LDLR-204ENST00000545707 CHORDC1Q9UHD1 332 aaPredicted RBP17.18■□□□□ 0.34
LDLR-204ENST00000545707 UBAP1LF5GYI3 381 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 DCAF12L1Q5VU92 463 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 LRCH2Q5VUJ6 765 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 AADACL2Q6P093 401 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 CCDC174Q6PII3 467 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 NLRP14Q86W24 1093 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 CALR3Q96L12 384 aaKnown RBP17.18■□□□□ 0.34
LDLR-204ENST00000545707 GPR88Q9GZN0 384 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 OLFML3Q9NRN5 406 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 AMFRQ9UKV5 643 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 C10orf71Q711Q0 1435 aa17.18■□□□□ 0.34
LDLR-204ENST00000545707 RASGEF1CQ8N431 466 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 ZNF622Q969S3 477 aaKnown RBP eCLIP17.17■□□□□ 0.343e-9■□□□□ 10.9
LDLR-204ENST00000545707 PARVGQ9HBI0 331 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 GREB1LQ9C091 1923 aaPredicted RBP17.17■□□□□ 0.34
LDLR-204ENST00000545707 TISP43B9A030 160 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 TRIM37O94972 964 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 MMP14P50281 582 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 DHX9Q08211 1270 aaKnown RBP17.17■□□□□ 0.34
LDLR-204ENST00000545707 ODF2Q5BJF6 829 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 MYCBPAPQ8TBZ2 947 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 GMCL1Q96IK5 515 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 FIZ1Q96SL8 496 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 THAP2Q9H0W7 228 aa17.17■□□□□ 0.34
LDLR-204ENST00000545707 ATAD5Q96QE3 1844 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 CPP00450 1065 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 SRCAPQ6ZRS2 3230 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 ZNF720Q7Z2F6 126 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 FAM178BQ8IXR5 827 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 GMCL1P1Q8NEA9 526 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 GLG1Q92896 1179 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 LRRC45Q96CN5 670 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 HOOK2Q96ED9 719 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 STK33Q9BYT3 514 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 ERVK-5Q9HDB9 667 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 TMOD4Q9NZQ9 345 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.16■□□□□ 0.34
LDLR-204ENST00000545707 CNOT8Q9UFF9 292 aaKnown RBP17.16■□□□□ 0.34
LDLR-204ENST00000545707 NOVA2Q9UNW9 492 aaKnown RBP17.16■□□□□ 0.34
LDLR-204ENST00000545707 A0A0A6YYK5 440 aaPredicted RBP17.16■□□□□ 0.34
LDLR-204ENST00000545707 BHMG1C9JSJ3 638 aaPredicted RBP17.16■□□□□ 0.34
LDLR-204ENST00000545707 NPR1P16066 1061 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 ODR4Q5SWX8 454 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 EMC10Q5UCC4 262 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 PHLDB3Q6NSJ2 640 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 B4GALNT4Q76KP1 1039 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 SYCE1Q8N0S2 351 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 ACER1Q8TDN7 264 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 IDI2Q9BXS1 227 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 INTS2Q9H0H0 1204 aaKnown RBP17.16■□□□□ 0.34
LDLR-204ENST00000545707 PCIF1Q9H4Z3 704 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 EFCC1Q9HA90 598 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 AGPAT3Q9NRZ7 376 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 PKD2L1Q9P0L9 805 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 COG5Q9UP83 839 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 CAPN7Q9Y6W3 813 aa17.16■□□□□ 0.34
LDLR-204ENST00000545707 UBR3Q6ZT12 1888 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 GTPBP10A4D1E9 387 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 A6NNZ2 444 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 CCDC188H7C350 402 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 DDX39AO00148 427 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 FOXN3O00409 490 aaPredicted RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 DDX3YO15523 660 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 PSMD10O75832 226 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 GAP43P17677 238 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 DLG4P78352 724 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 TUBB8Q3ZCM7 444 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 RNF187Q5TA31 235 aaPredicted RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 LRIG3Q6UXM1 1119 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 TRMT1LQ7Z2T5 733 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 TMC3Q7Z5M5 1100 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 OTUD6BQ8N6M0 293 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 SLC20A1Q8WUM9 679 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 CTNNBL1Q8WYA6 563 aaPredicted RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 ATP8A1Q9Y2Q0 1164 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 PPP1R12BO60237 982 aaPredicted RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 CYP3A4P08684 503 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 ARP10275 920 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 POU5F1Q01860 360 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 ZYXQ15942 572 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 DACT2Q5SW24 774 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 RBM26Q5T8P6 1007 aaKnown RBP17.15■□□□□ 0.34
LDLR-204ENST00000545707 CHADLQ6NUI6 762 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 PODNQ7Z5L7 613 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 CCDC26Q8TAB7 109 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 RFFLQ8WZ73 363 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 SH2D3AQ9BRG2 576 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 THSD7AQ9UPZ6 1657 aa17.15■□□□□ 0.34
LDLR-204ENST00000545707 SIPA1L1O43166 1804 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms