RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 USP28Q96RU2 1077 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 TEX12Q9BXU0 123 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 RWDD3Q9Y3V2 267 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 CLTCQ00610 1675 aaKnown RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 ADCY3O60266 1144 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 MCF2P10911 925 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 SMARCA1P28370 1054 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 RPS6KA2Q15349 733 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 LRCH2Q5VUJ6 765 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 PIGBQ92521 554 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 ZMYND12Q9H0C1 365 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 USP44Q9H0E7 712 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 NOP53Q9NZM5 478 aaKnown RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 NCDNQ9UBB6 729 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 SLC4A7Q9Y6M7 1214 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 CHEK2O96017 543 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 ATP5BP06576 529 aaKnown RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 SFNP31947 248 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 CHRNA3P32297 505 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 DR1Q01658 176 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 IFRD2Q12894 506 aaPredicted RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 RASA3Q14644 834 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 LONRF3Q496Y0 759 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 DPH6Q7L8W6 267 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 DGKHQ86XP1 1220 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 PAGE5Q96GU1 130 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 ZNF496Q96IT1 587 aaPredicted RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 RNPC3Q96LT9 517 aaKnown RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 GABPAQ06546 454 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 SLFN13Q68D06 897 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 C2orf40Q9H1Z8 148 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 ANTXR1Q9H6X2 564 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 DYRK4Q9NR20 520 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 METP08581 1390 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 A0A0D9SFI3 127 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 HARSP12081 509 aaKnown RBP8.37□□□□□ -1.07
VPS13D-211ENST00000543710 CA4P22748 312 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 ARPP19P56211 112 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 NFIXQ14938 502 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 TMEM132BQ14DG7 1078 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 SLC45A4Q5BKX6 768 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 AGBL2Q5U5Z8 902 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 FAM186BQ8IYM0 893 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 PLA2G12BQ9BX93 195 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 VPS54Q9P1Q0 977 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 FEM1BQ9UK73 627 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 CLIC4Q9Y696 253 aa8.37□□□□□ -1.07
VPS13D-211ENST00000543710 HNRNPRO43390 633 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 PDE8BO95263 885 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 TMEM191BP0C7N4 346 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 MUTP22033 750 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 ARL4DP49703 201 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 ATN1P54259 1190 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 KCNQ4P56696 695 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 RWDD2BP57060 319 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 CCDC157Q569K6 752 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 EDC3Q96F86 508 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 DDNO94850 711 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 MTERF2Q49AM1 385 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 SYDE2Q5VT97 1194 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 CMTM5Q96DZ9 223 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 TMEM169Q96HH4 297 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 SEZ6LQ9BYH1 1024 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 NDUFA10O95299 355 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 PRR29P0C7W0 189 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 NOP14P78316 857 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 STILQ15468 1287 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 SGO2Q562F6 1265 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 STRIP1Q5VSL9 837 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 C7orf61Q8IZ16 206 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 UCMAQ8WVF2 138 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 BLZF1Q9H2G9 400 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 LGALS16A8MUM7 142 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 CHMP2AO43633 222 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 MX2P20592 715 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 CRKP46108 304 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 ADKP55263 362 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 SPARCL1Q14515 664 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 IER5Q5VY09 327 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 TPH2Q8IWU9 490 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 CTAGE3PQ8IX95 158 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 OR6J1Q8NGC5 347 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 BCAS4Q8TDM0 211 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 SYN2Q92777 582 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 EML4Q9HC35 981 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 APOBEC2Q9Y235 224 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 MROH7-TTC4A0A0A0MT08 1334 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 PNPLA7Q6ZV29 1317 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 KLRF2D3W0D1 207 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 NR1D1P20393 614 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 ARL4AP40617 200 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 POLGP54098 1239 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 HDAC4P56524 1084 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 NLRP11P59045 1033 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 PTH1RQ03431 593 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 RNF207Q6ZRF8 634 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 MIGA2Q7L4E1 593 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 SCG3Q8WXD2 468 aaKnown RBP8.36□□□□□ -1.07
VPS13D-211ENST00000543710 BATF3Q9NR55 127 aa8.36□□□□□ -1.07
VPS13D-211ENST00000543710 IL1RAPL1Q9NZN1 696 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms