RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 USP17L15C9J2P7 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L13C9JLJ4 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L11C9JVI0 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L18D6R9N7 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L22D6RA61 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L17D6RBQ6 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L19D6RCP7 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L20D6RJB6 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 MEIS2O14770 477 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 CHUKO15111 745 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 DDX3YO15523 660 aaKnown RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 TTI1O43156 1089 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 GHRP10912 638 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 MUTP22033 750 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 PSMC2P35998 433 aaKnown RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 SLC16A2P36021 539 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 GSCP56915 257 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L24Q0WX57 530 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 IFT88Q13099 833 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 PABPC4Q13310 644 aaKnown RBP eCLIP14.9□□□□□ -0.028e-7■■□□□ 12
VPS33A-208ENST00000543633 TCERG1LQ5VWI1 586 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 USP17L6PQ6QN14 398 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 KCTD1Q719H9 257 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 DDX42Q86XP3 938 aaKnown RBP eCLIP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 CLEC10AQ8IUN9 316 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 CACNA2D3Q8IZS8 1091 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 LNX1Q8TBB1 728 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 LENG9Q96B70 501 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 CRAMP1Q96RY5 1269 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 MYCBPQ99417 103 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 PPANQ9NQ55 473 aaKnown RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 DDX20Q9UHI6 824 aaKnown RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 AJAP1Q9UKB5 411 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 RBBP6Q7Z6E9 1792 aaKnown RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 EVI5O60447 810 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 ITGA4P13612 1032 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 DHX9Q08211 1270 aaKnown RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 PPP2R5AQ15172 486 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 KRT71Q3SY84 523 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 DUPD1Q68J44 220 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 FAM186BQ8IYM0 893 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 ATP8B4Q8TF62 1192 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 CTNNBL1Q8WYA6 563 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-208ENST00000543633 PGM2Q96G03 612 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 FAM129AQ9BZQ8 928 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 CENPHQ9H3R5 247 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 GOLPH3Q9H4A6 298 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 POLLQ9UGP5 575 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 RASAL2Q9UJF2 1139 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 VAV3Q9UKW4 847 aa14.9□□□□□ -0.02
VPS33A-208ENST00000543633 ZMYM2Q9UBW7 1377 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 PFASO15067 1338 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 SYNGAP1Q96PV0 1343 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 ANKRD31Q8N7Z5 1873 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 BUB1BO60566 1050 aaPredicted RBP14.89□□□□□ -0.03
VPS33A-208ENST00000543633 CYP3A4P08684 503 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 BYSLQ13895 437 aaKnown RBP14.89□□□□□ -0.03
VPS33A-208ENST00000543633 ODF2Q5BJF6 829 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 HHIPL2Q6UWX4 724 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 STXBP4Q6ZWJ1 553 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 OR2W6PQ8NHA6 318 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 RAPGEF5Q92565 580 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 AMNQ9BXJ7 453 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 TUFT1Q9NNX1 390 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 NOVA2Q9UNW9 492 aaKnown RBP14.89□□□□□ -0.03
VPS33A-208ENST00000543633 RABGAP1Q9Y3P9 1069 aa14.89□□□□□ -0.03
VPS33A-208ENST00000543633 MIF4GDA9UHW6 222 aaKnown RBP14.88□□□□□ -0.03
VPS33A-208ENST00000543633 GCNT3O95395 438 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 GGPS1O95749 300 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 PSMC6P62333 389 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 PLS1Q14651 629 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 PRR16Q569H4 304 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 GKAP1Q5VSY0 366 aaPredicted RBP14.88□□□□□ -0.03
VPS33A-208ENST00000543633 DEFB132Q7Z7B7 95 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 RHOT2Q8IXI1 618 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 MAGEC3Q8TD91 643 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 SEC16BQ96JE7 1060 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 ERP44Q9BS26 406 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 KLC4Q9NSK0 619 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 PARP2Q9UGN5 583 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 TGFB1I1O43294 461 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 FGGP02679 453 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 FLT3P36888 993 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 FMO5P49326 533 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 CASP4P49662 377 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 MAGOHP61326 146 aaKnown RBP14.88□□□□□ -0.03
VPS33A-208ENST00000543633 GTF2IP78347 998 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 DR1Q01658 176 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 IFFO1Q0D2I5 559 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 MYBPC2Q14324 1141 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 ANKRD20A8PQ5CZ79 823 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 C11orf63Q6NUN7 778 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 SLC35G2Q8TBE7 412 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 MAGOHBQ96A72 148 aaKnown RBP14.88□□□□□ -0.03
VPS33A-208ENST00000543633 RUNDC3BQ96NL0 473 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 TMEM109Q9BVC6 243 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 KDM4CQ9H3R0 1056 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 ZDHHC18Q9NUE0 388 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 USP40Q9NVE5 1235 aa14.88□□□□□ -0.03
VPS33A-208ENST00000543633 KCND2Q9NZV8 630 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms