RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SNX14Q9Y5W7 946 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 PRPF3O43395 683 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 CHMP2AO43633 222 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 PDGFBP01127 241 aaPredicted RBP17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 OATP04181 439 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 PSAPP07602 524 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 LAG3P18627 525 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 TECP42680 631 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 GPC3P51654 580 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 TCF15Q12870 199 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 ANKRD54Q6NXT1 300 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 BMP8AQ7Z5Y6 402 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 RNF169Q8NCN4 708 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 PBXIP1Q96AQ6 731 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 ASIC4Q96FT7 647 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 MFSD14AQ96MC6 490 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 SH2D3AQ9BRG2 576 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 UNC45AQ9H3U1 944 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 NCOA5Q9HCD5 579 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 ENTPD7Q9NQZ7 604 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 AAASQ9NRG9 546 aa17.5■□□□□ 0.39
CLSTN3-213ENST00000541953 CDC45O75419 566 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 EIF4BP23588 611 aaKnown RBP17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 PLCB3Q01970 1234 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 TMEM184AQ6ZMB5 413 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 ZNF598Q86UK7 904 aaKnown RBP17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 TMEM173Q86WV6 379 aaPredicted RBP17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 HELQQ8TDG4 1101 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 CEP89Q96ST8 783 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 KCNH6Q9H252 994 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 C6orf50Q9HD87 102 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 DISC1Q9NRI5 854 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 SAMM50Q9Y512 469 aa17.49■□□□□ 0.39
CLSTN3-213ENST00000541953 MEIS3P2A8K0S8 358 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 WDR64B1ANS9 1081 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 NT5C1B-RDH14C9J2C7 533 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 STBD1O95210 358 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 KRT32Q14532 448 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 KANK3Q6NY19 840 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 LRRC43Q8N309 656 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 SLC5A5Q92911 643 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 MAP7D2Q96T17 732 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 CDCA3Q99618 268 aaPredicted RBP17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 SMOC2Q9H3U7 446 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 LZTS1Q9Y250 596 aa17.48■□□□□ 0.39
CLSTN3-213ENST00000541953 B4GALT3O60512 393 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 WEE2P0C1S8 567 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 DARSP14868 501 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 CCT2P78371 535 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 FGD1P98174 961 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 TARBP2Q15633 366 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 LONRF3Q496Y0 759 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 ODR4Q5SWX8 454 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 SLC39A11Q8N1S5 342 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 BCL7CQ8WUZ0 217 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 AUTS2Q8WXX7 1259 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 CCDC136Q96JN2 1154 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 FAM167AQ96KS9 214 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 ZNF558Q96NG5 402 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 SLC26A6Q9BXS9 759 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 AGXT2Q9BYV1 514 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 FAM86C1Q9NVL1 165 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 CEP131Q9UPN4 1083 aa17.47■□□□□ 0.39
CLSTN3-213ENST00000541953 MAGEB2O15479 319 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 TDP2O95551 362 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 RPS6KB1P23443 525 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 HSPA4P34932 840 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 SIGLEC14Q08ET2 396 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 PTPN21Q16825 1174 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 B3GNT9Q6UX72 402 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 FBXL6Q8N531 539 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 LPPQ93052 612 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 POMKQ9H5K3 350 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 TCEAL9Q9UHQ7 104 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 HCFC2Q9Y5Z7 792 aa17.46■□□□□ 0.39
CLSTN3-213ENST00000541953 CACNA1HO95180 2353 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 CCDC196A0A1B0GTZ2 297 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 C2orf71A6NGG8 1288 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 DTNBO60941 627 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 PSMD10O75832 226 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 HMGB1P09429 215 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 GNA11P29992 359 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 NPY5RQ15761 445 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 MTERF2Q49AM1 385 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 LRCH2Q5VUJ6 765 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 PDE12Q6L8Q7 609 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 BLOC1S2Q6QNY1 142 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 TMC7Q7Z402 723 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 CCDC12Q8WUD4 166 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 AIFM3Q96NN9 605 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 LARP6Q9BRS8 491 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 RNF26Q9BY78 433 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 SPG21Q9NZD8 308 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 PLXNA3P51805 1871 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 DENND4AQ7Z401 1863 aa17.45■□□□□ 0.38
CLSTN3-213ENST00000541953 A0A0U1RQF3 1178 aa17.44■□□□□ 0.38
CLSTN3-213ENST00000541953 C2CD4DB7Z1M9 353 aa17.44■□□□□ 0.38
CLSTN3-213ENST00000541953 GAS7O60861 476 aa17.44■□□□□ 0.38
CLSTN3-213ENST00000541953 CLASP2O75122 1294 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-213ENST00000541953 ZSCAN20P17040 1043 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms