RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 V9GY48 417 aaPredicted RBP13.89□□□□□ -0.19
SNHG1-216ENST00000541416 CCDC196A0A1B0GTZ2 297 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 HIDE1A8MVS5 230 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 ZBTB42B2RXF5 422 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 H0Y858 1186 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 GALR2O43603 387 aaPredicted RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 CYP3A4P08684 503 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 SP100P23497 879 aaPredicted RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 CLK2P49760 499 aaKnown RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 NLRP11P59045 1033 aaKnown RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 CDC42EP1Q00587 391 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 GIT2Q14161 759 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 TYW1BQ6NUM6 668 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 TRMT1LQ7Z2T5 733 aaKnown RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 ECHDC2Q86YB7 292 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 TDRD5Q8NAT2 981 aaKnown RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 RNF169Q8NCN4 708 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 TMEM169Q96HH4 297 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 LSG1Q9H089 658 aaKnown RBP13.88□□□□□ -0.19
SNHG1-216ENST00000541416 MFSD1Q9H3U5 465 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 ANO2Q9NQ90 1003 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 NRBP2Q9NSY0 501 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 DZANK1Q9NVP4 752 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 HCSTQ9UBK5 93 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 HCFC2Q9Y5Z7 792 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 VPS13AQ96RL7 3174 aa13.88□□□□□ -0.19
SNHG1-216ENST00000541416 A0A0U1RQF3 1178 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 GOLGA8AA7E2F4 631 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 GOLGA8BA8MQT2 603 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 FAM86B1E9PN63 330 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 DHX15O43143 795 aaKnown RBP13.87□□□□□ -0.19
SNHG1-216ENST00000541416 FAM86B2P0C5J1 330 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 CLCN3P51790 818 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 RCAN1P53805 252 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 NECTIN1Q15223 517 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 ATAT1Q5SQI0 421 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 JAKMIP3Q5VZ66 844 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 EFCAB12Q6NXP0 572 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 C6orf50Q9HD87 102 aa13.87□□□□□ -0.19
SNHG1-216ENST00000541416 IGLV3-22A0A075B6J6 115 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 C2orf71A6NGG8 1288 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 WDR64B1ANS9 1081 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 PROB1E7EW31 1015 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 SKIP12755 728 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 ATP4AP20648 1035 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 GNA11P29992 359 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 FGD1P98174 961 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 LRRC55Q6ZSA7 311 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 DHX32Q7L7V1 743 aaKnown RBP13.86□□□□□ -0.19
SNHG1-216ENST00000541416 REXO1Q8N1G1 1221 aaKnown RBP13.86□□□□□ -0.19
SNHG1-216ENST00000541416 SLC39A11Q8N1S5 342 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 BICD2Q8TD16 824 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 ESYT1Q9BSJ8 1104 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 POMKQ9H5K3 350 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 GABBR1Q9UBS5 961 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 STK39Q9UEW8 545 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 DBR1Q9UK59 544 aaKnown RBP13.86□□□□□ -0.19
SNHG1-216ENST00000541416 USTQ9Y2C2 406 aa13.86□□□□□ -0.19
SNHG1-216ENST00000541416 ESYT2A0FGR8 921 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 SPDYE4A6NLX3 237 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 C2CD4DB7Z1M9 353 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 CXCL14O95715 111 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 OATP04181 439 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 HMGB1P09429 215 aaKnown RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 PBX3P40426 434 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 POLGP54098 1239 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 TBC1D8BQ0IIM8 1120 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 KRT32Q14532 448 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 PFKFB3Q16875 520 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 ASTLQ6HA08 431 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 PPFIBP1Q86W92 1011 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 ZDHHC14Q8IZN3 488 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 NLRP7Q8WX94 980 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 ACSF2Q96CM8 615 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 CHST12Q9NRB3 414 aa13.85□□□□□ -0.19
SNHG1-216ENST00000541416 NAP1L2Q9ULW6 460 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 ZFHX2Q9C0A1 2572 aaPredicted RBP13.85□□□□□ -0.19
SNHG1-216ENST00000541416 KLF18A0A0U1RQI7 1052 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 CLASP2O75122 1294 aaKnown RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 BRD1O95696 1058 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 PDGFBP01127 241 aaPredicted RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 DARSP14868 501 aaKnown RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 SFNP31947 248 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 DNM2P50570 870 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 METAP2P50579 478 aaKnown RBP eCLIP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 CLCN5P51795 746 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 BCAR1P56945 870 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 AKAP17AQ02040 695 aaKnown RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 FUT2Q10981 343 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 PRR16Q569H4 304 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 CLLU1OSQ5K130 101 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 RARS2Q5T160 578 aaKnown RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 KIAA1841Q6NSI8 718 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 VPS52Q8N1B4 723 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 LRRC71Q8N4P6 559 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 HELQQ8TDG4 1101 aa13.84□□□□□ -0.19
SNHG1-216ENST00000541416 YTHDC1Q96MU7 727 aaKnown RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 GCOM2Q9BZD3 368 aaPredicted RBP13.84□□□□□ -0.19
SNHG1-216ENST00000541416 INO80BQ9C086 356 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms