RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PPATQ06203 517 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 STXBP2Q15833 593 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 Q3C1V9 767 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 XRRA1Q6P2D8 792 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 DNAAF5Q86Y56 855 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 PDCL2Q8N4E4 241 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 BSNDQ8WZ55 320 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 HAUS4Q9H6D7 363 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 MYPNQ86TC9 1320 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 GOLGA8IPA6NC78 632 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 GOLGA8JA6NMD2 632 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 SPATA31C2B4DYI2 1134 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 DLG4P78352 724 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 CDK17Q00537 523 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 HSP90AA2PQ14568 343 aaPredicted RBP15.9■□□□□ 0.14
CLIP1-216ENST00000541410 GNPTABQ3T906 1256 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 CBWD6Q4V339 395 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 CBWD3Q5JTY5 395 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 CBWD5Q5RIA9 395 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 DPY19L2P1Q6NXN4 242 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 CHST13Q8NET6 341 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 IQCDQ96DY2 449 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 MLXIPQ9HAP2 919 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 METTL14Q9HCE5 456 aaKnown RBP15.9■□□□□ 0.14
CLIP1-216ENST00000541410 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLIP1-216ENST00000541410 FRMD4BQ9Y2L6 1034 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 PCDHA13Q9Y5I0 950 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 SOWAHBA6NEL2 793 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 SLC16A3O15427 465 aaKnown RBP15.89■□□□□ 0.13
CLIP1-216ENST00000541410 LRRN2O75325 713 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 UCHL3P15374 230 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 PRKCEQ02156 737 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 MTERF2Q49AM1 385 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 RIOX2Q8IUF8 465 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 DRC1Q96MC2 740 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.89■□□□□ 0.13
CLIP1-216ENST00000541410 CLEC11AQ9Y240 323 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 USP20Q9Y2K6 914 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 SPDYE5A6NIY4 337 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 POTEB2H3BUK9 544 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 MAFGO15525 162 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 CNMDO75829 334 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 STBD1O95210 358 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 PSAPP07602 524 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 KLHDC7AQ5VTJ3 777 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 USP50Q70EL3 339 aaPredicted RBP15.89■□□□□ 0.13
CLIP1-216ENST00000541410 SPAG5Q96R06 1193 aa15.89■□□□□ 0.13
CLIP1-216ENST00000541410 NAPGQ99747 312 aaPredicted RBP15.89■□□□□ 0.13
CLIP1-216ENST00000541410 KRT86O43790 486 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 SRGAP2O75044 1071 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 TADA3O75528 432 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 VAV2P52735 878 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 KIF5AQ12840 1032 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 SLC9C1Q4G0N8 1177 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 TEX35Q5T0J7 233 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 ARID2Q68CP9 1835 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 GBP6Q6ZN66 633 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 UBXN4Q92575 508 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 DMAC2Q9NW81 257 aa15.88■□□□□ 0.13
CLIP1-216ENST00000541410 ATP1A1P05023 1023 aaKnown RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 GJA5P36382 358 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 NPTX2P47972 431 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 MAP1SQ66K74 1059 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 FBXO38Q6PIJ6 1188 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ABHD15Q6UXT9 468 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 SMAP1Q8IYB5 467 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ATP6V0A1Q93050 837 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 SIX2Q9NPC8 291 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ANKEF1Q9NU02 776 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ADAMTS1Q9UHI8 967 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 SALL4Q9UJQ4 1053 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 LOC285556D6RIA3 1793 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 PFASO15067 1338 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 UBE4BO95155 1302 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 EIF3JO75822 258 aaKnown RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 MOCS3O95396 460 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 CYP2C8P10632 490 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 FMO5P49326 533 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 KLHL30Q0D2K2 578 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ASTE1Q2TB18 679 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 PROCA1Q8NCQ7 364 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 SAAL1Q96ER3 474 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 L3MBTL3Q96JM7 780 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ACCSQ96QU6 501 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 SENP7Q9BQF6 1050 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 TAF1DQ9H5J8 278 aaPredicted RBP15.87■□□□□ 0.13
CLIP1-216ENST00000541410 RBPJLQ9UBG7 517 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 CAPN6Q9Y6Q1 641 aa15.87■□□□□ 0.13
CLIP1-216ENST00000541410 ADGRA3Q8IWK6 1321 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 ANKRD63C9JTQ0 380 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 ATP4AP20648 1035 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 MAGEA1P43355 309 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 ASIC2Q16515 512 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 LY6KQ17RY6 165 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 OTUD6AQ7L8S5 288 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 DNERQ8NFT8 737 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 CDHR1Q96JP9 859 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 IWS1Q96ST2 819 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 EDEM3Q9BZQ6 932 aa15.86■□□□□ 0.13
CLIP1-216ENST00000541410 XPNPEP1Q9NQW7 623 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms