RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 PI15O43692 258 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 EOMESO95936 686 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 NPR3P17342 541 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 EIF4BP23588 611 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 MCM5P33992 734 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 CA8P35219 290 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 ZNF76P36508 570 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 LIFRP42702 1097 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 ALDH7A1P49419 539 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 GIT2Q14161 759 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 CLLU1OSQ5K130 101 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 CWF19L1Q69YN2 538 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 KANK3Q6NY19 840 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 TMTC3Q6ZXV5 915 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 NIPA1Q7RTP0 329 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 CKAP2LQ8IYA6 745 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 TMEM87AQ8NBN3 555 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 RNF169Q8NCN4 708 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 PGBD1Q96JS3 809 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 ADAMTS10Q9H324 1103 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 MAFBQ9Y5Q3 323 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 IRAK3Q9Y616 596 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 CACNA1AO00555 2505 aa13.21□□□□□ -0.29
CLSTN3-209ENST00000539982 A0A0U1RQF3 1178 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 NT5C1B-RDH14C9J2C7 533 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 CENPBP07199 599 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 GSPT1P15170 499 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 SREBF1P36956 1147 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 METAP2P50579 478 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 BCAR1P56945 870 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 NLRP11P59045 1033 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 TDGQ13569 410 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 ANGPT1Q15389 498 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 TTC22Q5TAA0 569 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 WWC2Q6AWC2 1192 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 ZNF598Q86UK7 904 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 CCDC105Q8IYK2 499 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 VPS52Q8N1B4 723 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 HELQQ8TDG4 1101 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 SLC22A17Q8WUG5 538 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 ACSF2Q96CM8 615 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 TMEM169Q96HH4 297 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 RTP3Q9BQQ7 232 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 MRPL9Q9BYD2 267 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 ANO3Q9BYT9 981 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 CEP131Q9UPN4 1083 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 SLC12A7Q9Y666 1083 aa13.2□□□□□ -0.3
CLSTN3-209ENST00000539982 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 SGSM2O43147 1006 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 EPCAMP16422 314 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 TMOD1P28289 359 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 ADCY7P51828 1080 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 POLGP54098 1239 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 NAPAP54920 295 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 TYW1BQ6NUM6 668 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 EFCAB12Q6NXP0 572 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 OTOP3Q7RTS5 596 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 TRMT1LQ7Z2T5 733 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 PLA2G4DQ86XP0 818 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 RAB11FIP4Q86YS3 637 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 DTWD2Q8NBA8 298 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 MAP7D2Q96T17 732 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 ZBP1Q9H171 429 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 SEMA4AQ9H3S1 761 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 AKT3Q9Y243 479 aa13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 RBM8AQ9Y5S9 174 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-209ENST00000539982 CARNS1A5YM72 827 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 SMCO2A6NFE2 343 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 FAM86B1E9PN63 330 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 IPO5O00410 1097 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 FAM86B2P0C5J1 330 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 CTSAP10619 480 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 CLK2P49760 499 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 CLCN3P51790 818 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 AP3B2Q13367 1082 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 ZNF746Q6NUN9 644 aaPredicted RBP13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 PPP1R18Q6NYC8 613 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 TMC5Q6UXY8 1006 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 GPR149Q86SP6 731 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 DDX53Q86TM3 631 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 CABP7Q86V35 215 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 PPFIBP1Q86W92 1011 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 LINC01465Q8N7H1 131 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 AUTS2Q8WXX7 1259 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 RSPH1Q8WYR4 309 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 GLT8D2Q9H1C3 349 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 KCNK12Q9HB15 430 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 TBC1D22BQ9NU19 505 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 DACT1Q9NYF0 836 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 FBXL21Q9UKT6 434 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 DUSP12Q9UNI6 340 aa13.18□□□□□ -0.3
CLSTN3-209ENST00000539982 EP300Q09472 2414 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 IGLV3-22A0A075B6J6 115 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 PSAPP07602 524 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 CYP3A4P08684 503 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 DARSP14868 501 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 CCDC149Q6ZUS6 474 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 SMAP1Q8IYB5 467 aaPredicted RBP13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 SIX5Q8N196 739 aa13.17□□□□□ -0.3
CLSTN3-209ENST00000539982 KCNG4Q8TDN1 519 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms