RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SLFN11Q7Z7L1 901 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 TLCD1Q96CP7 247 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 NAP1L4Q99733 375 aaKnown RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 TRAF3IP3Q9Y228 551 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 A0A0A6YYK5 440 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 ATP6V1G2O95670 118 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 SOX5P35711 763 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 NBPF9Q3BBW0 867 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 WLSQ5T9L3 541 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 OTUD6AQ7L8S5 288 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 SLF2Q8IX21 1173 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 MYCT1Q8N699 235 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 ATP8B4Q8TF62 1192 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 C18orf8Q96DM3 657 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 RSRC1Q96IZ7 334 aaKnown RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 SEMA4AQ9H3S1 761 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 CD209Q9NNX6 404 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 CHORDC1Q9UHD1 332 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 DBR1Q9UK59 544 aaKnown RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 PITPNM2Q9BZ72 1349 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 MKRN4PQ13434 485 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 PPP2R5EQ16537 467 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 PPP1R18Q6NYC8 613 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 CCDC105Q8IYK2 499 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 SLFN12Q8IYM2 578 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 EPS8L3Q8TE67 593 aaKnown RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 ARHGEF26Q96DR7 871 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 THOC1Q96FV9 657 aaKnown RBP12.18□□□□□ -0.46
SYNE1-237ENST00000539504 THAP2Q9H0W7 228 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 BCS1LQ9Y276 419 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 KIF1CO43896 1103 aaKnown RBP12.17□□□□□ -0.46
SYNE1-237ENST00000539504 DNAJC8O75937 253 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-237ENST00000539504 GHRP10912 638 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 SNAP25P60880 206 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 HYIQ5T013 277 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 RNF25Q96BH1 459 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-237ENST00000539504 MLXIPLQ9NP71 852 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 KCNK9Q9NPC2 374 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.17□□□□□ -0.46
SYNE1-237ENST00000539504 INTUQ9ULD6 942 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 IGSF9BQ9UPX0 1349 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 RASGRF2O14827 1237 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 NEBLO76041 1014 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 TRIM49P0CI25 452 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 TRIM49CP0CI26 452 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 PLS1Q14651 629 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 C6orf118Q5T5N4 469 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 DUPD1Q68J44 220 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 TRPM8Q7Z2W7 1104 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 KSR1Q8IVT5 923 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 ANKRD42Q8N9B4 389 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 CDCA7Q9BWT1 371 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-237ENST00000539504 SIX2Q9NPC8 291 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 NHSL1Q5SYE7 1610 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 FAM187AA6NFU0 413 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 C6orf229H3BNL8 230 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 TMEM253P0C7T8 217 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 ANXA13P27216 316 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 NPEPPSP55786 919 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 MESDQ14696 234 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 USH1GQ495M9 461 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 ACCSLQ4AC99 568 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 PIGOQ8TEQ8 1089 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 STAMBPL1Q96FJ0 436 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 CARD9Q9H257 536 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 TAOK3Q9H2K8 898 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 TAS2R14Q9NYV8 317 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 STK38LQ9Y2H1 464 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 L3MBTL1Q9Y468 752 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 MYH1P12882 1939 aa12.17□□□□□ -0.46
SYNE1-237ENST00000539504 PPIP5K2O43314 1243 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 CHMP2AO43633 222 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 NMT1P30419 496 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 PSMC2P35998 433 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 MAPK7Q13164 816 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 QRICH1Q2TAL8 776 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 DCAF12L1Q5VU92 463 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 UBL4BQ8N7F7 174 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 RPGRQ92834 1020 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 MIEF2Q96C03 454 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 MXD3Q9BW11 206 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 STMN4Q9H169 189 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 NARFQ9UHQ1 456 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 DDX3YO15523 660 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 C21orf2O43822 256 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 HOXD13P35453 343 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 RHBDL3P58872 404 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ADCY2Q08462 1091 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 GRAPQ13588 217 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ZC2HC1CQ53FD0 456 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 GPATCH4Q5T3I0 446 aaKnown RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 SEL1L2Q5TEA6 688 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 HS2ST1Q7LGA3 356 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 GRAPLQ8TC17 118 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ALG3Q92685 438 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 RUSC1Q9BVN2 902 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 ABCF3Q9NUQ8 709 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.16□□□□□ -0.46
SYNE1-237ENST00000539504 RGL1Q9NZL6 768 aa12.16□□□□□ -0.46
SYNE1-237ENST00000539504 STRCP1A6NGW2 1772 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms