RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 KCND2Q9NZV8 630 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 TRIM10Q9UDY6 481 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 PLAGL2Q9UPG8 496 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 SNCAIPQ9Y6H5 919 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 ATP2A1O14983 1001 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 CALUO43852 315 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-210ENST00000538120 SH3D19Q5HYK7 790 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 ARHGEF16Q5VV41 709 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 DPY19L2P1Q6NXN4 242 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 ZNF720Q7Z2F6 126 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 HDXQ7Z353 690 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 VSIG10LQ86VR7 867 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 C10orf67Q8IYJ2 551 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 FHDC1Q9C0D6 1143 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-210ENST00000538120 PARVGQ9HBI0 331 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 TBC1D22BQ9NU19 505 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 TFR2Q9UP52 801 aa11.78□□□□□ -0.52
CLIP1-210ENST00000538120 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLIP1-210ENST00000538120 DICER1Q9UPY3 1922 aaKnown RBP11.78□□□□□ -0.52
CLIP1-210ENST00000538120 EIF3CLB5ME19 914 aaKnown RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 MYO1CO00159 1063 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 EIF3DO15371 548 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 AKAP3O75969 853 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 LYPLA2O95372 231 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 CCNE2O96020 404 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 NR3C1P04150 777 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 PLEKP08567 350 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 FRMD5Q7Z6J6 570 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 KSR1Q8IVT5 923 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 CCDC170Q8IYT3 715 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 EIF3CQ99613 913 aaKnown RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 STRA6Q9BX79 667 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 EDEM3Q9BZQ6 932 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 SPON1Q9HCB6 807 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 ZNHIT6Q9NWK9 470 aaKnown RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 ARHGAP20Q9P2F6 1191 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 ODF2LQ9ULJ1 636 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 ARHGEF35A5YM69 484 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 RCCD1A6NED2 376 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 LRRC53A6NM62 1247 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 SPDYE16A6NNV3 312 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 ZNF263O14978 683 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 HOXB1P14653 301 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 CASP4P49662 377 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 APBA1Q02410 837 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 KCNH2Q12809 1159 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 VGLL4Q14135 290 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 UGCGQ16739 394 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 PDXDC1Q6P996 788 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 ZNF662Q6ZS27 426 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 GOLGA5Q8TBA6 731 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 BORCS6Q96GS4 357 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 TMOD4Q9NZQ9 345 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 SEL1LQ9UBV2 794 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 DBR1Q9UK59 544 aaKnown RBP11.77□□□□□ -0.53
CLIP1-210ENST00000538120 FAM184BQ9ULE4 1060 aa11.77□□□□□ -0.53
CLIP1-210ENST00000538120 LRRIQ3A6PVS8 624 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-210ENST00000538120 CLIC2O15247 247 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 HIP1RO75146 1068 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 RGS20O76081 388 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 NR3C2P08235 984 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 ACTN2P35609 894 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 QARSP47897 775 aaKnown RBP11.76□□□□□ -0.53
CLIP1-210ENST00000538120 SLC20A2Q08357 652 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 CASP8Q14790 479 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 XRRA1Q6P2D8 792 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 PADI6Q6TGC4 694 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 RRAGAQ7L523 313 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 CRACR2AQ9BSW2 395 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 LSM14BQ9BX40 385 aaKnown RBP11.76□□□□□ -0.53
CLIP1-210ENST00000538120 ADARB2Q9NS39 739 aaKnown RBP11.76□□□□□ -0.53
CLIP1-210ENST00000538120 PSD3Q9NYI0 1048 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 SBF1O95248 1867 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 ADM5C9JUS6 153 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 ENC1O14682 589 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 CYLC1P35663 651 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-210ENST00000538120 RARRES1P49788 294 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 NFIL3Q16649 462 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 NAPGQ99747 312 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-210ENST00000538120 CYP39A1Q9NYL5 469 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 HDAC6Q9UBN7 1215 aa11.76□□□□□ -0.53
CLIP1-210ENST00000538120 COL11A1P12107 1806 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 TESPA1A2RU30 521 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CTAGE15A4D2H0 777 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 TMEM150BA6NC51 233 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 SLC16A3O15427 465 aaKnown RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CTAGE8P0CG41 777 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CCND2P30279 289 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 MLLT3P42568 568 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 IRX3P78415 501 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 ODR4Q5SWX8 454 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 TREML2Q5T2D2 321 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 HGSNATQ68CP4 663 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CTAGE6Q86UF2 777 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 GPIHBP1Q8IV16 184 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CTAGE4Q8IX94 777 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CCDC102AQ96A19 550 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 INPP4AQ96PE3 977 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 TEX13BQ9BXU2 312 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 LACRTQ9GZZ8 138 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms