RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HSD17B14Q9BPX1 270 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 DHX33Q9H6R0 707 aaKnown RBP16.56■□□□□ 0.24
USP28-204ENST00000537642 SUCLA2Q9P2R7 463 aaPredicted RBP16.56■□□□□ 0.24
USP28-204ENST00000537642 FNDC1Q4ZHG4 1894 aaPredicted RBP16.55■□□□□ 0.24
USP28-204ENST00000537642 KIAA1671Q9BY89 1806 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 DENND3A2RUS2 1198 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 POTEMA6NI47 508 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 C9IYK1 514 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 STAG3L1P0CL83 205 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 IBSPP21815 317 aaPredicted RBP16.55■□□□□ 0.24
USP28-204ENST00000537642 U2AF2P26368 475 aaKnown RBP eCLIP16.55■□□□□ 0.24
USP28-204ENST00000537642 MCM2P49736 904 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 GATMP50440 423 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 DNM2P50570 870 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 GNL2Q13823 731 aaKnown RBP16.55■□□□□ 0.24
USP28-204ENST00000537642 BTG3Q14201 252 aaPredicted RBP16.55■□□□□ 0.24
USP28-204ENST00000537642 TTC38Q5R3I4 469 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 NEK9Q8TD19 979 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 NLRP7Q8WX94 980 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 SCLT1Q96NL6 688 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 JPH2Q9BR39 696 aaPredicted RBP16.55■□□□□ 0.24
USP28-204ENST00000537642 C1orf112Q9NSG2 853 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 LMCD1Q9NZU5 365 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 PPME1Q9Y570 386 aa16.55■□□□□ 0.24
USP28-204ENST00000537642 A0A087WZ62 844 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 CSDE1O75534 798 aaKnown RBP16.54■□□□□ 0.24
USP28-204ENST00000537642 LYPLA2O95372 231 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 FGFR4P22455 802 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 TRAPPC10P48553 1259 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 POLGP54098 1239 aaPredicted RBP16.54■□□□□ 0.24
USP28-204ENST00000537642 CDC42EP1Q00587 391 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 ORC2Q13416 577 aaPredicted RBP16.54■□□□□ 0.24
USP28-204ENST00000537642 NBR1Q14596 966 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 XKR9Q5GH70 373 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 SLC24A5Q71RS6 500 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 OTUD6AQ7L8S5 288 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 RHPN2Q8IUC4 686 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 KSR1Q8IVT5 923 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 CMTR2Q8IYT2 770 aaKnown RBP16.54■□□□□ 0.24
USP28-204ENST00000537642 SLC7A3Q8WY07 619 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 CLP1Q92989 425 aaKnown RBP16.54■□□□□ 0.24
USP28-204ENST00000537642 FDXACB1Q9BRP7 624 aaPredicted RBP16.54■□□□□ 0.24
USP28-204ENST00000537642 BACH2Q9BYV9 841 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 LRFN2Q9ULH4 789 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 PCDHB7Q9Y5E2 793 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 VCANP13611 3396 aa16.54■□□□□ 0.24
USP28-204ENST00000537642 MYO7AQ13402 2215 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 H3BNC9 293 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 OR52Z1P0C646 297 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 GJB2P29033 226 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 CTNNB1P35222 781 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 RFC5P40937 340 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 TOB1P50616 345 aaPredicted RBP16.53■□□□□ 0.24
USP28-204ENST00000537642 FAM189BP81408 668 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 PAN2Q504Q3 1202 aaKnown RBP16.53■□□□□ 0.24
USP28-204ENST00000537642 ZNF410Q86VK4 478 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 TMEM143Q96AN5 459 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 GCOM2Q9BZD3 368 aaPredicted RBP16.53■□□□□ 0.24
USP28-204ENST00000537642 BMP2KQ9NSY1 1161 aaPredicted RBP16.53■□□□□ 0.24
USP28-204ENST00000537642 NOL7Q9UMY1 257 aaKnown RBP16.53■□□□□ 0.24
USP28-204ENST00000537642 KIF3AQ9Y496 699 aa16.53■□□□□ 0.24
USP28-204ENST00000537642 MRPL42Q9Y6G3 142 aaKnown RBP16.53■□□□□ 0.24
USP28-204ENST00000537642 C5orf67F2Z3F1 127 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 SPATA31C1P0DKV0 1188 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 BMPR1AP36894 532 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 TECP42680 631 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 GPM6BQ13491 265 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 EMC2Q15006 297 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 FAM102BQ5T8I3 360 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 EXOC8Q8IYI6 725 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 C4orf32Q8N8J7 132 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 NLRP4Q96MN2 994 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 ANKEF1Q9NU02 776 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 THEGQ9P2T0 379 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 RWDD3Q9Y3V2 267 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 COL4A3BPQ9Y5P4 624 aa16.52■□□□□ 0.24
USP28-204ENST00000537642 ATG2AQ2TAZ0 1938 aa16.52■□□□□ 0.23
USP28-204ENST00000537642 BRWD1Q9NSI6 2320 aa16.52■□□□□ 0.23
USP28-204ENST00000537642 A0A087WWV3 80 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 RB1P06400 928 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 ZSCAN20P17040 1043 aaPredicted RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 SKIV2LQ15477 1246 aaKnown RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 PIGOQ8TEQ8 1089 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 PRPF31Q8WWY3 499 aaKnown RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 PSPC1Q8WXF1 523 aaKnown RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 MRPL38Q96DV4 380 aaKnown RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 ELAC1Q9H777 363 aaKnown RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 IFT122Q9HBG6 1241 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 XPNPEP1Q9NQW7 623 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 RNF216Q9NWF9 866 aaPredicted RBP16.51■□□□□ 0.23
USP28-204ENST00000537642 TMEM161AQ9NX61 479 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 PCDHB6Q9Y5E3 794 aa16.51■□□□□ 0.23
USP28-204ENST00000537642 DLL1O00548 723 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 GAS2O43903 313 aaKnown RBP16.5■□□□□ 0.23
USP28-204ENST00000537642 MED24O75448 989 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 FGFR1P11362 822 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 RARRES1P49788 294 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 LAMTOR4Q0VGL1 99 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 MCTP1Q6DN14 999 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 CATSPER3Q86XQ3 398 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms