RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 KRT80Q6KB66 452 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 TMEM270Q6UE05 265 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 LCA5Q86VQ0 697 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 PASD1Q8IV76 773 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 ACAP3Q96P50 834 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 MXD3Q9BW11 206 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 TRAIPQ9BWF2 469 aa19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 SUDS3Q9H7L9 328 aaPredicted RBP19.43■□□□□ 0.7
SFSWAP-203ENST00000535236 ACSL3O95573 720 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 NR3C1P04150 777 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 ESRRAP11474 423 aaPredicted RBP19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 ADCY2Q08462 1091 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 DYDC2Q96IM9 177 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 NARFQ9UHQ1 456 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 POTEMA6NI47 508 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 SFNP31947 248 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 CUL1Q13616 776 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 PPP1R18Q6NYC8 613 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 CRLF3Q8IUI8 442 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 NCLNQ969V3 563 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 MAP3K7O43318 606 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 GCLMP48507 274 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 GPSM2P81274 684 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 PFKFB3Q16875 520 aaPredicted RBP19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 MAGEB5Q9BZ81 275 aa19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 FARP1Q9Y4F1 1045 aaPredicted RBP19.42■□□□□ 0.7
SFSWAP-203ENST00000535236 COPEO14579 308 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 CD209Q9NNX6 404 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 PODXLO00592 558 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 ATP6V1E1P36543 226 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 SLC7A5Q01650 507 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 CUL4AQ13619 759 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 MXD4Q14582 209 aaPredicted RBP19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 ALS2CLQ60I27 953 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 TEX2Q8IWB9 1127 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 SYNE4Q8N205 404 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 RNF181Q9P0P0 153 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 STAP1Q9ULZ2 295 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 SUGT1Q9Y2Z0 365 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 HEY1Q9Y5J3 304 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L15C9J2P7 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L13C9JLJ4 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L11C9JVI0 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L18D6R9N7 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L22D6RA61 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L17D6RBQ6 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L19D6RCP7 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L20D6RJB6 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 CREB3O43889 395 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 PRDX5P30044 214 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L24Q0WX57 530 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 USP17L6PQ6QN14 398 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 RAD54LQ92698 747 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 FAM20AQ96MK3 541 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 CEP72Q9P209 647 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 M0QYV0 167 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 PPP1R12AO14974 1030 aaPredicted RBP19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 TBCCQ15814 346 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 ZC3H15Q8WU90 426 aaKnown RBP19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 MINPP1Q9UNW1 487 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 ROBO2Q9HCK4 1378 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 UTYO14607 1347 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 PI4K2BG5E9Z4 385 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 ZRANB2O95218 330 aaKnown RBP eCLIP19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 PPP4R4Q6NUP7 873 aa19.41■□□□□ 0.7
SFSWAP-203ENST00000535236 TMCC1O94876 653 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 SDC4P31431 198 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 FBXW4P57775 412 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 TRIM4Q9C037 500 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 ZNF212Q9UDV6 495 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 MIF4GDA9UHW6 222 aaKnown RBP19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 CCDC188H7C350 402 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 PTK2BQ14289 1009 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 RESP18Q5W5W9 173 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 SWSAP1Q6NVH7 229 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 GCOM2Q9BZD3 368 aaPredicted RBP19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 ANLNQ9NQW6 1124 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 ANGPTL2Q9UKU9 493 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 FAM196BA6NMK8 535 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 GPC5P78333 572 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 SYNGAP1Q96PV0 1343 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 CEP170Q5SW79 1584 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 FCER1AP12319 257 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 HADHAP40939 763 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 TTC23LQ6PF05 361 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 HEMGNQ9BXL5 484 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 GABBR1Q9UBS5 961 aa19.4■□□□□ 0.7
SFSWAP-203ENST00000535236 KRT38O76015 456 aa19.39■□□□□ 0.7
SFSWAP-203ENST00000535236 LARGE1O95461 756 aa19.39■□□□□ 0.7
SFSWAP-203ENST00000535236 TBXAS1P24557 533 aaPredicted RBP19.39■□□□□ 0.7
SFSWAP-203ENST00000535236 TMPRSS15P98073 1019 aa19.39■□□□□ 0.7
SFSWAP-203ENST00000535236 IMPG1Q17R60 797 aa19.39■□□□□ 0.7
SFSWAP-203ENST00000535236 KIF21AQ7Z4S6 1674 aa19.39■□□□□ 0.7
SFSWAP-203ENST00000535236 E9PMD0 336 aa19.39■□□□□ 0.69
SFSWAP-203ENST00000535236 ANP32DO95626 131 aa19.39■□□□□ 0.69
SFSWAP-203ENST00000535236 SPP2Q13103 211 aa19.39■□□□□ 0.69
SFSWAP-203ENST00000535236 PROM2Q8N271 834 aa19.39■□□□□ 0.69
SFSWAP-203ENST00000535236 TTC17Q96AE7 1141 aa19.39■□□□□ 0.69
SFSWAP-203ENST00000535236 ULK4Q96C45 1275 aa19.39■□□□□ 0.69
SFSWAP-203ENST00000535236 OTUD5Q96G74 571 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms