RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ZMIZ1Q9ULJ6 1067 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 TRPV2Q9Y5S1 764 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.5□□□□□ -1.21
CD44-237ENST00000534082 LOXHD1Q8IVV2 1947 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 IGSF9BQ9UPX0 1349 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 CACNA1IQ9P0X4 2223 aa7.5□□□□□ -1.21
CD44-237ENST00000534082 FNDC1Q4ZHG4 1894 aaPredicted RBP7.49□□□□□ -1.21
CD44-237ENST00000534082 LOC400499M0QZD8 3231 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 RNF113AO15541 343 aaKnown RBP7.49□□□□□ -1.21
CD44-237ENST00000534082 LAMTOR5O43504 91 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 MGEA5O60502 916 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 LRRN2O75325 713 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 GOLGA8HP0CJ92 632 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 FGFR1P11362 822 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 CCND2P30279 289 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 HSD17B4P51659 736 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 SP4Q02446 784 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 KRT17Q04695 432 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 SPEM2Q0P670 501 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 TMEM62Q0P6H9 643 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 PGM5Q15124 567 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 NONOQ15233 471 aaKnown RBP eCLIP7.49□□□□□ -1.21
CD44-237ENST00000534082 GRIK4Q16099 956 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 GPATCH4Q5T3I0 446 aaKnown RBP7.49□□□□□ -1.21
CD44-237ENST00000534082 IER5Q5VY09 327 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 KCNT2Q6UVM3 1135 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 GPR149Q86SP6 731 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 CABP7Q86V35 215 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 VSIG10LQ86VR7 867 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 FTSJ3Q8IY81 847 aaKnown RBP7.49□□□□□ -1.21
CD44-237ENST00000534082 ZBTB44Q8NCP5 570 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 ZNF558Q96NG5 402 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 UBA5Q9GZZ9 404 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 SFXN1Q9H9B4 322 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 SLC27A5Q9Y2P5 690 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 MRPL11Q9Y3B7 192 aaKnown RBP7.49□□□□□ -1.21
CD44-237ENST00000534082 TELO2Q9Y4R8 837 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 SQORQ9Y6N5 450 aa7.49□□□□□ -1.21
CD44-237ENST00000534082 CNOT1A5YKK6 2376 aaKnown RBP7.49□□□□□ -1.21
CD44-237ENST00000534082 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 MBLAC1A4D2B0 266 aaPredicted RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 M0QZ92 97 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 OPLAHO14841 1288 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 ORC4O43929 436 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 TBC1D4O60343 1298 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 LILRB5O75023 590 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 RPLP2P05387 115 aaKnown RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 ZFYP08048 801 aaPredicted RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 MARK3P27448 753 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 GHRHRQ02643 423 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 CSTF1Q05048 431 aaKnown RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 TMEM266Q2M3C6 531 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 QRICH1Q2TAL8 776 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 GNPTABQ3T906 1256 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 MARCH8Q5T0T0 291 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 N4BP2L1Q5TBK1 243 aaPredicted RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 DCLRE1AQ6PJP8 1040 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 UNQ6494/PRO21346Q6UXR6 183 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 CYFIP1Q7L576 1253 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 LRRC43Q8N309 656 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 DDX1Q92499 740 aaKnown RBP7.48□□□□□ -1.21
CD44-237ENST00000534082 GLG1Q92896 1179 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 ZBTB10Q96DT7 871 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 BCO2Q9BYV7 579 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 ATP6V0A4Q9HBG4 840 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 TOMM22Q9NS69 142 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 ZSCAN32Q9NX65 697 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 SPG21Q9NZD8 308 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 PATJQ8NI35 1801 aa7.48□□□□□ -1.21
CD44-237ENST00000534082 DENND3A2RUS2 1198 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 C1QTNF9BB2RNN3 333 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 C9IYK1 514 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 N4BP1O75113 896 aaKnown RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 RAB11FIP3O75154 756 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 ZIC2O95409 532 aaPredicted RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 C1QTNF9P0C862 333 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 GBP2P32456 591 aaPredicted RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 IGBP1P78318 339 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 NFX1Q12986 1120 aaKnown RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 NEDD9Q14511 834 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 LETM2Q2VYF4 491 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 RRP12Q5JTH9 1297 aaKnown RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 LIAT1Q6ZQX7 453 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 LRRC55Q6ZSA7 311 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 STOX1Q6ZVD7 989 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 ADGRF4Q8IZF3 695 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 SLC44A3Q8N4M1 653 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 KRI1Q8N9T8 703 aaKnown RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 TMEM87AQ8NBN3 555 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 SLC22A17Q8WUG5 538 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 AUTS2Q8WXX7 1259 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 SEC62Q99442 399 aaKnown RBP7.47□□□□□ -1.21
CD44-237ENST00000534082 ADAM2Q99965 735 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 RGS18Q9NS28 235 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 C1orf112Q9NSG2 853 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 TMEM161AQ9NX61 479 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 NBEAQ8NFP9 2946 aa7.47□□□□□ -1.21
CD44-237ENST00000534082 LAMA5O15230 3695 aa7.46□□□□□ -1.21
CD44-237ENST00000534082 FOXP2O15409 715 aa7.46□□□□□ -1.22
CD44-237ENST00000534082 FIBPO43427 364 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms