RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CA3P07451 260 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 POLGP54098 1239 aaPredicted RBP14.48□□□□□ -0.09
VPS28-216ENST00000533806 DSC3Q14574 896 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 GRIN2CQ14957 1233 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 EMC2Q15006 297 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 POTEGQ6S5H5 508 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 ZNF410Q86VK4 478 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 KSR1Q8IVT5 923 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 ERMNQ8TAM6 284 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 SP7Q8TDD2 431 aaPredicted RBP14.48□□□□□ -0.09
VPS28-216ENST00000533806 RC3H2Q9HBD1 1191 aaKnown RBP14.48□□□□□ -0.09
VPS28-216ENST00000533806 IFT122Q9HBG6 1241 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 STK24Q9Y6E0 443 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 PTPRSQ13332 1948 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 A0A087WZ62 844 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 LCHNA4D1U4 455 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 PP2D1A8MPX8 630 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 TLL1O43897 1013 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 DGAT1O75907 488 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 CDC25AP30304 524 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 FAM189BP81408 668 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 TAP1Q03518 808 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 PTPAQ15257 358 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 SF3A1Q15459 793 aaKnown RBP14.47□□□□□ -0.09
VPS28-216ENST00000533806 HYIQ5T013 277 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 HAUS3Q68CZ6 603 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 FAM173BQ6P4H8 233 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 MYOCDQ8IZQ8 938 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 TMEM143Q96AN5 459 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 ZNF668Q96K58 619 aaPredicted RBP14.47□□□□□ -0.09
VPS28-216ENST00000533806 FAM161BQ96MY7 647 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 FDXACB1Q9BRP7 624 aaPredicted RBP14.47□□□□□ -0.09
VPS28-216ENST00000533806 RAB34Q9BZG1 259 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 SLC28A3Q9HAS3 691 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 RGS18Q9NS28 235 aa14.47□□□□□ -0.09
VPS28-216ENST00000533806 EVPLQ92817 2033 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 CSDE1O75534 798 aaKnown RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 BMP15O95972 392 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 ARL2P36404 184 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 CCT6AP40227 531 aaKnown RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 POU5F1BQ06416 359 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 LAMTOR4Q0VGL1 99 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 NFX1Q12986 1120 aaKnown RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 ODR4Q5SWX8 454 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 RHPN2Q8IUC4 686 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 TCP11Q8WWU5 503 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 NLRP7Q8WX94 980 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 PSPC1Q8WXF1 523 aaKnown RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 ZNF689Q96CS4 500 aaPredicted RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 CDX2Q99626 313 aaPredicted RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 MTRQ99707 1265 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 ZSCAN16Q9H4T2 348 aaPredicted RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 INSL6Q9Y581 213 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 COL4A3BPQ9Y5P4 624 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 CLIC4Q9Y696 253 aa14.46□□□□□ -0.09
VPS28-216ENST00000533806 MORC2Q9Y6X9 1032 aaPredicted RBP14.46□□□□□ -0.09
VPS28-216ENST00000533806 MICAL3Q7RTP6 2002 aa14.46□□□□□ -0.1
VPS28-216ENST00000533806 VWA3AA6NCI4 1184 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 C9IYK1 514 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 ASAP2O43150 1006 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 PDIA4P13667 645 aaKnown RBP14.45□□□□□ -0.1
VPS28-216ENST00000533806 GRIN1Q05586 938 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 FAM117BQ6P1L5 589 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 SLC24A5Q71RS6 500 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 SPRED2Q7Z698 418 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 IFNLR1Q8IU57 520 aaPredicted RBP14.45□□□□□ -0.1
VPS28-216ENST00000533806 KCTD17Q8N5Z5 321 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 SNX29Q8TEQ0 813 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 AK8Q96MA6 479 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 ADAM2Q99965 735 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 ZBED2Q9BTP6 218 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 GCOM2Q9BZD3 368 aaPredicted RBP14.45□□□□□ -0.1
VPS28-216ENST00000533806 ATP6V0A4Q9HBG4 840 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 BMP2KQ9NSY1 1161 aaPredicted RBP14.45□□□□□ -0.1
VPS28-216ENST00000533806 KIAA1024Q9UPX6 916 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 COL4A6Q14031 1691 aa14.45□□□□□ -0.1
VPS28-216ENST00000533806 EYSQ5T1H1 3165 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 LINC01553A4QN01 128 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 DGKIO75912 1065 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 UPP2O95045 317 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 LINC00271P0C7V0 271 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 CYP11B2P19099 503 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 FGFR4P22455 802 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 GLRA2P23416 452 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 SARSP49591 514 aaKnown RBP14.44□□□□□ -0.1
VPS28-216ENST00000533806 MXD4Q14582 209 aaPredicted RBP14.44□□□□□ -0.1
VPS28-216ENST00000533806 KRT79Q5XKE5 535 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 PPP2R2DQ66LE6 453 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 KCNK18Q7Z418 384 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 ASAP3Q8TDY4 903 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 PNMA5Q96PV4 448 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 TRAIPQ9BWF2 469 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 INO80BQ9C086 356 aaPredicted RBP14.44□□□□□ -0.1
VPS28-216ENST00000533806 MINDY3Q9H8M7 445 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 C1orf112Q9NSG2 853 aa14.44□□□□□ -0.1
VPS28-216ENST00000533806 DDX19AQ9NUU7 478 aaKnown RBP14.44□□□□□ -0.1
VPS28-216ENST00000533806 TTC3P53804 2025 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 E9PMD0 336 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 SLC26A4O43511 780 aa14.43□□□□□ -0.1
VPS28-216ENST00000533806 USO1O60763 962 aaKnown RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms